Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017788.1 Corchorus olitorius cultivar O-4 contig17821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22396

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
465--566
22
4.7
21
78
11
100
40
9
9
40
1.71
465--566
43
2.3
44
83
8
120
40
9
9
40
1.71
509--591
44
1.9
43
85
2
112
43
8
8
39
1.65
581--649
22
3.2
21
77
6
57
26
18
5
49
1.70
465--642
22
8.1
22
73
9
60
35
14
8
41
1.76
1047--1091
2
22.5
2
100
0
90
51
0
48
0
1.00
2978--3027
25
2.0
25
92
0
82
42
6
16
36
1.72
3033--3185
22
6.8
22
80
8
121
43
5
12
37
1.67
3013--3186
44
3.9
44
76
12
149
41
6
12
38
1.70
3125--3192
22
3.1
22
86
0
91
39
0
17
42
1.50
3324--3377
22
2.5
22
84
6
65
44
5
11
38
1.63
3339--3417
22
3.6
22
73
10
54
36
7
13
41
1.74
3853--3899
17
2.8
17
83
9
60
19
6
14
59
1.56
7759--7813
27
2.0
27
100
0
110
20
10
29
40
1.86
10434--10461
2
14.0
2
100
0
56
50
0
0
50
1.00
13373--13430
24
2.3
25
85
11
75
31
5
17
46
1.70
16286--16330
22
2.0
22
100
0
90
26
28
8
35
1.87
16381--16442
31
2.0
31
87
0
88
32
19
3
45
1.66
16486--16657
93
1.8
93
91
0
281
33
13
1
51
1.52
16811--16837
14
1.9
14
100
0
54
22
11
0
66
1.22
22156--22187
13
2.5
13
95
5
57
53
0
9
37
1.34

Tables:   1

The End!