genome.fa.s17791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017791.1 Corchorus olitorius cultivar O-4 contig17824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220146

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76--126	2	25.5	2	82	7	59	50	1	1	45	1.24
4177--4219	21	2.1	21	91	4	70	13	18	18	48	1.80
4383--4456	37	2.0	37	94	0	130	27	17	4	51	1.63
8153--8211	27	2.2	27	81	0	64	30	22	13	33	1.92
13773--13819	23	2.0	23	87	0	67	10	17	0	72	1.12
13811--13862	21	2.5	20	81	9	59	15	5	0	78	0.92
13904--13981	34	2.2	35	82	8	88	6	35	41	16	1.74
17421--17471	17	3.1	16	86	8	66	35	21	21	21	1.96
18048--18257	21	10.3	21	74	19	171	52	4	19	22	1.64
18074--18166	7	13.3	7	69	13	57	55	2	21	20	1.53
18078--18166	35	2.5	35	90	0	124	55	2	21	21	1.55
18357--18421	27	2.4	28	85	10	91	56	1	21	20	1.50
19315--19382	22	3.2	20	85	6	82	38	8	11	41	1.73
19653--19688	13	2.8	13	82	0	54	47	0	0	52	1.00
23698--23976	22	12.6	22	76	5	141	39	8	16	35	1.79
23771--23911	66	2.1	66	81	5	160	41	9	16	31	1.81
23809--23976	66	2.5	65	80	4	176	40	8	16	34	1.79
24218--24259	20	2.1	20	95	0	75	28	16	0	54	1.42
26221--26294	35	2.1	36	92	2	123	20	21	10	47	1.80
26221--26278	20	3.2	20	67	23	63	20	22	8	48	1.77
26264--26295	16	2.0	16	100	0	64	18	18	18	43	1.88
27756--27800	16	2.7	17	86	6	74	42	40	13	4	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28584--28617	17	1.9	18	88	5	52	50	2	2	44	1.32
28831--28878	25	2.0	25	92	8	82	45	6	4	43	1.48
31510--31584	28	2.7	28	79	2	80	28	22	10	38	1.87
35510--35622	51	2.2	51	90	0	172	31	7	38	23	1.81
37246--37291	22	2.0	24	83	8	60	45	2	2	50	1.26
38080--38289	108	1.9	110	91	1	343	44	12	10	32	1.77
39723--39762	20	2.0	21	90	5	64	45	17	20	17	1.86
40465--40505	2	20.5	2	87	0	55	2	4	41	51	1.36
40467--40505	14	2.8	14	96	0	69	2	5	41	51	1.38
40467--40514	14	3.3	14	83	11	60	2	4	39	54	1.32
43559--43623	26	2.9	21	75	20	76	46	20	3	30	1.66
44548--44612	26	2.9	21	75	20	76	46	20	3	30	1.66
50905--51153	137	1.8	137	98	0	480	26	9	31	32	1.88
61622--61657	19	1.9	18	88	5	54	27	22	8	41	1.82
62985--63494	168	3.0	167	89	1	752	30	7	25	35	1.84
65525--66167	213	3.0	213	94	1	1146	33	18	16	32	1.93
69744--69779	19	1.9	18	88	5	54	41	2	22	33	1.68
71264--71288	7	3.6	7	100	0	50	0	12	0	88	0.53
73686--73742	30	2.0	28	86	6	78	54	0	21	24	1.45
74102--74400	50	6.0	50	92	0	492	19	15	29	35	1.93
74102--74400	25	12.0	25	88	5	444	19	15	29	35	1.93
77153--77185	17	2.0	17	88	5	50	39	12	6	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82126--82169	16	3.0	14	87	12	54	11	9	18	61	1.55
93535--93561	13	2.1	13	100	0	54	29	14	18	37	1.91
94729--94777	25	2.0	25	95	0	89	14	32	18	34	1.91
95096--95120	7	3.6	7	100	0	50	32	28	0	40	1.57
95653--95701	25	2.0	25	95	0	89	12	30	20	36	1.89
97003--97047	6	7.5	6	89	0	54	77	0	22	0	0.76
97002--97047	9	5.1	9	83	0	56	76	0	23	0	0.79
97703--97835	67	2.0	67	98	0	257	27	15	25	30	1.96
98229--98287	19	3.1	19	65	18	50	42	23	1	32	1.64
101492--101520	1	29.0	1	100	0	58	100	0	0	0	0.00
105951--105988	19	2.0	19	94	0	67	10	44	15	28	1.80
115528--115602	37	2.0	37	92	0	123	24	5	20	50	1.68
117289--117350	19	3.2	19	70	19	56	40	1	19	38	1.61
119557--119605	23	2.1	23	81	7	55	46	8	14	30	1.73
125603--125637	6	5.8	6	96	0	61	28	0	51	20	1.47
126794--126841	21	2.3	21	82	7	62	45	8	6	39	1.59
127397--127432	12	2.9	12	91	4	54	22	5	0	72	1.05
132661--132710	15	3.3	15	81	18	59	80	14	6	0	0.90
135161--135213	26	2.0	26	92	0	88	67	13	7	11	1.40
140227--140316	41	2.2	41	87	0	126	46	16	15	21	1.84
142745--142770	10	2.6	10	100	0	52	11	7	11	69	1.37
143068--143144	29	2.7	28	89	2	109	41	25	14	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143555--143618	32	2.0	32	90	0	101	21	26	25	26	2.00
147297--147423	62	2.1	61	96	1	236	29	25	11	33	1.90
150162--150198	19	2.0	19	94	5	67	67	0	0	32	0.91
150592--150650	18	3.3	18	67	9	57	25	13	13	47	1.79
150457--151166	108	6.6	108	86	6	853	25	15	11	46	1.80
150443--151166	36	20.2	36	82	9	729	25	16	11	46	1.80
153262--153297	17	2.1	17	94	0	63	25	25	16	33	1.96
156406--156564	79	2.0	79	93	0	273	34	21	15	28	1.94
161097--161158	29	2.1	29	96	0	115	20	17	20	40	1.92
168301--168333	16	2.1	16	94	0	57	45	0	0	54	0.99
175868--175897	10	2.8	11	90	10	53	56	0	0	43	0.99
183782--183900	59	2.0	59	100	0	238	31	11	16	39	1.85
186719--186769	6	8.8	6	75	16	54	1	19	50	27	1.58
186719--186773	23	2.4	22	85	8	74	1	21	49	27	1.60
186738--186773	12	3.1	12	92	8	65	0	22	52	25	1.47
186731--186769	11	3.5	11	89	6	60	2	17	53	25	1.56
186718--186769	17	3.1	17	83	5	61	1	19	51	26	1.57
186908--186954	13	3.8	12	78	13	51	55	4	0	40	1.19
187281--187328	21	2.2	21	85	3	60	58	27	0	14	1.37
187521--187553	17	1.9	17	88	11	50	27	0	9	63	1.24
187704--187752	20	2.3	22	89	6	75	36	0	6	57	1.24
196380--196426	26	1.9	23	87	12	67	40	4	27	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198981--199026	20	2.3	20	81	3	58	58	0	0	41	0.98
199099--199140	22	2.0	21	85	4	57	16	33	33	16	1.92
199102--199206	33	3.2	32	81	5	113	15	31	33	20	1.93
199102--199206	32	3.2	33	80	8	108	15	31	33	20	1.93
199868--199900	2	17.5	2	87	12	52	48	0	0	51	1.00
213546--213596	25	2.0	25	84	3	66	27	29	19	23	1.98
213621--213647	11	2.5	11	100	0	54	25	22	0	51	1.48

Tables:   1

The End!