Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017793.1 Corchorus olitorius cultivar O-4 contig17826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5197
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:3115 original size:26 final size:26

Alignment explanation


    Indices: 3067--3118  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       3057 GAAATAGGCA

                              *       
       3067 AATTAAACTAGAAAACAATAAAATAG
          1 AATTAAACTAGAAAACAAGAAAATAG

                        * **          
       3093 AATTAAACTAGATATTAAGAAAATAG
          1 AATTAAACTAGAAAACAAGAAAATAG

       3119 TTTGAGAAAA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.62, C:0.06, G:0.10, T:0.23


Consensus pattern (26 bp):   
AATTAAACTAGAAAACAAGAAAATAG

Found at i:3870 original size:11 final size:11

Alignment explanation


    Indices: 3854--3878  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       3844 CAACGAAAAT

                       
       3854 AAGAAGAGAAG
          1 AAGAAGAGAAG

                       
       3865 AAGAAGAGAAG
          1 AAGAAGAGAAG

               
       3876 AAG
          1 AAG

       3879 GAGGCAGCGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (11 bp):   
AAGAAGAGAAG
Done.