Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017797.1 Corchorus olitorius cultivar O-4 contig17830, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7781
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:1275 original size:24 final size:24

Alignment explanation


    Indices: 1223--1280  Score: 80
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       1213 CCACCTGCAC

                                   *
       1223 TTCCTCCACCTCAGAATCGGAACG
          1 TTCCTCCACCTCAGAATCGGAACA

            *             *       * 
       1247 CTCCTCCACCTCAGGATCGGAATA
          1 TTCCTCCACCTCAGAATCGGAACA

                      
       1271 TTCCTCCACC
          1 TTCCTCCACC

       1281 AATTCCCATT


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.22, C:0.41, G:0.14, T:0.22


Consensus pattern (24 bp):   
TTCCTCCACCTCAGAATCGGAACA

Found at i:2405 original size:21 final size:21

Alignment explanation


    Indices: 2381--2421  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2371 AAAACTAACG

                                 
       2381 AGAATATGTTGAGACATGAAA
          1 AGAATATGTTGAGACATGAAA

                                
       2402 AGAATATGTTGAGACATGAA
          1 AGAATATGTTGAGACATGAA

       2422 GGAGAGCTCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.46, C:0.05, G:0.24, T:0.24


Consensus pattern (21 bp):   
AGAATATGTTGAGACATGAAA
Done.