Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017800.1 Corchorus olitorius cultivar O-4 contig17833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40887

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1233--1272
15
2.6
16
88
4
55
15
10
12
62
1.54
12466--12526
31
2.1
28
87
9
86
39
18
13
29
1.88
19075--19239
31
5.5
31
69
16
130
33
18
19
27
1.95
19079--19244
60
2.8
60
91
0
278
34
18
19
27
1.95
19284--19448
31
5.5
29
70
16
122
27
20
18
33
1.96
19313--19413
29
3.4
28
70
16
96
26
19
19
33
1.96
19284--19444
60
2.7
59
93
3
268
26
19
18
34
1.95
31415--31459
21
2.1
21
83
0
54
35
11
40
13
1.80
33747--33778
16
2.1
15
94
5
55
81
0
18
0
0.70
33744--33778
13
2.6
14
86
9
54
77
0
22
0
0.78
33842--33875
12
2.9
12
86
4
52
76
0
23
0
0.79
40223--40290
31
2.2
31
86
5
93
57
19
5
17
1.60

Tables:   1

The End!