Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017801.1 Corchorus olitorius cultivar O-4 contig17834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33886

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72--109
2
19.0
2
100
0
76
50
0
0
50
1.00
6107--6657
190
3.0
184
87
5
785
33
12
17
36
1.88
6583--6729
72
2.0
73
92
1
242
31
16
14
36
1.89
9388--9619
128
1.8
128
96
0
428
29
15
20
34
1.94
13307--13387
42
1.9
42
92
0
135
29
7
14
48
1.71
14431--14470
21
2.0
20
85
14
55
15
7
30
47
1.72
14382--14475
25
4.0
24
66
23
65
15
11
26
45
1.81
14606--14688
42
2.0
42
95
0
148
37
1
8
53
1.39
14826--15034
62
3.4
62
83
0
265
27
13
9
49
1.72
14892--14940
25
2.0
25
91
0
80
28
18
6
46
1.72
17790--17988
105
1.9
103
88
2
299
28
18
16
36
1.93
24124--24163
21
1.9
21
89
0
62
25
0
40
35
1.56
24258--24294
19
2.0
19
94
5
67
32
0
0
67
0.91
25577--25630
27
2.0
27
100
0
108
33
11
11
44
1.75
27020--27054
18
1.9
18
94
0
61
22
11
14
51
1.74
31535--31565
3
10.3
3
100
0
62
32
0
0
67
0.91

Tables:   1

The End!