Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017806.1 Corchorus olitorius cultivar O-4 contig17839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13427
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27


Found at i:12684 original size:8 final size:9

Alignment explanation


    Indices: 12658--12686  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

      12648 CCCAAATTAC

                     
      12658 TTATGGAAA
          1 TTATGGAAA

                     
      12667 TTATGGAAA
          1 TTATGGAAA

                     
      12676 TTA-GGAAA
          1 TTATGGAAA

               
      12684 TTA
          1 TTA

      12687 AATGAATTAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   8    8  0.40
   9   12  0.60

ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34


Consensus pattern (9 bp):   
TTATGGAAA
Done.