Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017807.1 Corchorus olitorius cultivar O-4 contig17840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58017

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2512--2637
64
2.0
64
96
0
234
38
13
15
32
1.86
8971--9391
152
2.8
153
92
1
695
30
16
17
35
1.92
15746--15790
21
2.1
21
87
0
63
31
33
22
13
1.92
18535--18583
21
2.3
21
82
6
55
40
16
28
14
1.87
21042--21086
21
2.1
21
84
8
56
31
26
0
42
1.56
26630--26687
4
14.5
4
85
7
64
41
0
8
50
1.33
26719--26752
2
16.5
2
93
6
59
47
2
0
50
1.16
27738--27876
67
2.0
68
95
2
253
47
16
13
22
1.81
28886--28925
13
3.0
13
82
7
53
35
2
0
62
1.09
28928--28975
8
6.5
8
86
13
68
10
10
8
70
1.33
32187--32247
32
1.9
32
93
0
104
27
21
4
45
1.72
53288--53524
34
7.6
31
83
12
240
35
14
15
34
1.88
53287--53524
62
3.9
59
81
13
241
35
14
15
34
1.88
53287--53524
96
2.6
90
86
7
320
35
14
15
34
1.88
53691--53719
2
15.0
2
92
7
51
51
0
0
48
1.00
54781--54839
29
2.0
29
100
0
118
45
40
3
10
1.54
55594--55705
58
1.9
57
89
1
170
31
14
20
33
1.92
57616--57945
164
2.0
165
95
1
592
48
8
10
32
1.68

Tables:   1

The End!