Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017809.1 Corchorus olitorius cultivar O-4 contig17842, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67121

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1035--1083
15
2.9
17
82
14
57
51
2
4
42
1.32
1054--1277
115
1.9
115
90
3
353
47
4
11
36
1.62
1144--1510
142
2.6
143
96
1
673
48
6
9
35
1.62
2379--2427
24
2.0
24
100
0
98
26
20
4
48
1.67
3545--3605
21
3.0
20
86
6
88
32
19
11
36
1.88
6800--6899
52
1.9
52
93
0
173
30
10
9
51
1.66
10827--10859
6
5.7
6
92
7
59
84
0
15
0
0.61
11772--11895
22
5.7
22
73
11
85
41
14
13
30
1.85
11772--11872
43
2.3
43
81
5
123
39
14
14
30
1.87
11937--11995
22
2.7
23
79
15
61
44
1
23
30
1.64
12141--12285
22
6.6
22
76
0
119
35
10
15
38
1.82
12141--12284
66
2.2
66
82
1
162
35
9
15
38
1.81
12141--12285
44
3.3
44
81
1
166
35
10
15
38
1.82
13698--13723
12
2.2
12
100
0
52
57
7
0
34
1.27
28513--28928
206
2.0
206
90
1
647
30
18
15
35
1.92
35486--35628
22
7.1
20
75
15
107
38
6
15
39
1.74
35553--35632
19
4.2
18
73
16
72
42
6
12
38
1.68
35553--35632
39
2.1
37
84
9
99
42
6
12
38
1.68
35732--35783
26
2.0
26
88
0
77
34
7
13
44
1.72
35687--36153
22
21.0
22
71
10
272
34
11
16
37
1.85
61010--61146
31
4.4
31
80
0
139
22
24
21
31
1.98
61021--61139
62
1.9
62
84
0
157
22
21
21
33
1.97

Tables:   1

The End!