Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017813.1 Corchorus olitorius cultivar O-4 contig17846, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43786

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3413--3481
35
1.9
36
91
2
113
21
10
8
59
1.57
3981--4391
203
2.0
203
95
1
736
43
8
11
36
1.71
4501--4581
39
2.0
40
92
2
137
37
3
8
50
1.51
4868--4936
35
1.9
36
88
2
104
23
10
7
59
1.54
6535--6615
39
2.0
40
92
2
137
37
3
8
50
1.51
23420--23482
25
2.5
25
89
0
90
33
30
26
9
1.88
23467--23498
16
2.0
16
93
0
55
40
25
28
6
1.79
23440--23523
41
2.0
41
95
0
150
36
29
25
8
1.85
23481--23596
25
4.7
25
83
4
155
34
32
21
11
1.89
23481--23612
48
2.7
48
84
3
156
33
32
21
12
1.90
23600--24061
65
7.1
65
87
2
635
20
30
27
20
1.98
23616--24053
193
2.3
195
88
2
650
20
29
28
21
1.98
25652--25805
77
2.0
77
94
0
272
36
12
14
37
1.83
41637--41669
15
2.2
15
94
0
57
45
12
0
42
1.41
41984--42058
28
2.5
30
82
6
91
40
17
25
17
1.91

Tables:   1

The End!