Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017814.1 Corchorus olitorius cultivar O-4 contig17847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105056

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1111--2314
437
2.8
436
88
2
1648
42
12
14
31
1.83
38412--38439
2
14.0
2
100
0
56
50
0
0
50
1.00
39211--39240
7
4.3
7
100
0
60
40
13
30
16
1.87
46194--46243
20
2.5
21
80
9
59
52
2
32
14
1.53
46432--46469
11
3.5
11
89
10
51
39
0
2
57
1.12
51478--51518
18
2.3
18
87
8
57
39
0
26
34
1.57
56839--56865
14
1.9
14
100
0
54
85
0
14
0
0.61
57868--57910
22
2.0
21
86
9
59
69
2
6
20
1.23
62674--62790
31
3.5
31
68
18
90
43
12
17
26
1.85
62665--62799
71
1.9
71
95
0
243
44
12
15
27
1.83
62745--62825
29
2.7
29
84
7
92
43
12
17
27
1.84
71703--71774
33
2.2
33
100
0
144
18
37
30
13
1.89
72344--72402
32
1.9
32
89
6
95
25
11
13
49
1.76
83203--83385
94
2.0
93
93
1
312
46
19
7
26
1.76
85749--85787
19
2.1
19
95
0
69
25
12
30
30
1.93
85950--86043
47
2.0
47
91
4
154
31
14
20
32
1.93
86123--86175
27
2.0
27
96
0
97
26
18
13
41
1.87
92637--92833
99
2.0
98
94
3
342
41
5
14
38
1.69
92735--93108
138
2.7
137
93
1
660
43
5
12
39
1.65
94636--94681
22
2.1
22
83
0
56
39
2
0
58
1.10
105019--105056
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!