Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017820.1 Corchorus olitorius cultivar O-4 contig17853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70440

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
656--697
21
2.0
21
86
9
59
16
0
35
47
1.47
1561--1602
21
2.0
21
86
9
59
16
0
35
47
1.47
3100--4039
467
2.0
467
99
0
1871
27
15
21
35
1.94
9522--9588
34
2.0
34
81
0
80
40
10
7
41
1.67
18735--18769
11
3.2
11
87
0
52
82
0
17
0
0.66
18737--18769
14
2.5
13
90
9
50
84
0
15
0
0.61
22364--22406
17
2.7
16
82
7
52
51
16
9
23
1.73
35716--35790
37
2.0
37
84
5
98
36
25
21
17
1.95
37175--37326
73
2.1
72
87
1
223
34
13
19
32
1.91
44029--44137
56
1.9
56
81
7
132
32
21
15
31
1.94
44304--44488
93
2.0
93
89
2
282
31
16
18
33
1.93
50569--50665
48
2.0
47
90
5
151
39
4
15
41
1.66
57096--57121
13
2.0
13
100
0
52
53
30
0
15
1.42
58059--58098
17
2.4
17
87
8
55
37
20
20
22
1.94
58791--58838
14
3.5
14
72
16
55
60
14
18
6
1.55
58792--58843
27
1.9
27
100
0
104
61
13
19
5
1.52
58840--58871
15
2.1
15
94
0
55
62
15
6
15
1.51
62756--62806
22
2.3
22
83
6
59
41
9
9
39
1.71
70239--70276
18
2.2
18
85
4
51
71
7
10
10
1.32

Tables:   1

The End!