Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017823.1 Corchorus olitorius cultivar O-4 contig17856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33793

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11677--12004
41
7.8
42
83
7
391
41
26
10
20
1.85
11677--12004
84
3.9
84
92
2
543
41
26
10
20
1.85
12860--12905
25
2.0
24
87
12
69
54
19
8
17
1.68
17183--19760
658
3.9
654
81
6
2664
33
14
15
36
1.88
17183--19513
646
3.6
638
81
6
2527
33
14
15
36
1.88
20013--20054
22
1.9
22
95
0
75
35
16
9
38
1.81
20056--20527
22
21.9
22
73
11
245
32
19
12
35
1.90
20056--20527
44
11.0
43
71
12
317
32
19
12
35
1.90
20058--20507
66
7.0
63
75
13
307
32
20
12
35
1.90
20215--20286
35
2.0
36
84
10
94
31
19
12
36
1.89
20132--20370
123
2.0
122
84
5
313
32
19
12
35
1.90
20113--20384
145
1.9
145
82
9
349
32
19
12
35
1.89
20256--20419
87
1.9
87
82
8
208
33
17
12
36
1.87
20704--20832
63
2.0
64
90
1
206
49
9
9
31
1.66
21308--21358
22
2.2
24
83
16
72
41
0
0
58
0.98
21308--21356
25
2.0
25
84
8
64
40
0
0
59
0.98
27490--27538
16
3.1
16
75
18
57
0
8
16
75
1.03
29488--29518
2
15.5
2
93
0
53
48
3
0
48
1.17
29819--29885
21
3.2
21
66
16
57
52
11
1
34
1.48
32233--32347
58
2.0
58
87
3
169
32
19
14
33
1.92

Tables:   1

The End!