Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017829.1 Corchorus olitorius cultivar O-4 contig17862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5638
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29


Found at i:4907 original size:2 final size:2

Alignment explanation


    Indices: 4900--4925  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       4890 AGTTGTTTAG

                                                  
       4900 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       4926 TAATTGATAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.