Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001783.1 Corchorus olitorius cultivar O-4 contig01783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3202
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38


Found at i:763 original size:22 final size:23

Alignment explanation


    Indices: 735--779  Score: 74
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        725 GGTATAATCA

                                   
        735 GGACTCC-TTGTGAGAGCATTTG
          1 GGACTCCTTTGTGAGAGCATTTG

                              *    
        757 GGACTCCTTTGTGAGAGCGTTTG
          1 GGACTCCTTTGTGAGAGCATTTG

        780 TCTTGCTTCA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  22    7  0.33
  23   14  0.67

ACGTcount: A:0.16, C:0.18, G:0.33, T:0.33


Consensus pattern (23 bp):   
GGACTCCTTTGTGAGAGCATTTG

Found at i:2641 original size:9 final size:9

Alignment explanation


    Indices: 2627--2662  Score: 54
    Period size: 9  Copynumber: 4.0  Consensus size: 9

       2617 ATATTTATTG

                     
       2627 TTTTTTAAT
          1 TTTTTTAAT

                     
       2636 TTTTTTAAT
          1 TTTTTTAAT

                 *  *
       2645 TTTTTAAAA
          1 TTTTTTAAT

                     
       2654 TTTTTTAAT
          1 TTTTTTAAT

       2663 ATTATTTTTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   9   23  1.00

ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72


Consensus pattern (9 bp):   
TTTTTTAAT
Done.