Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017830.1 Corchorus olitorius cultivar O-4 contig17863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36606

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1050--1133
27
3.1
27
85
1
105
26
13
26
34
1.93
2447--2487
20
2.0
20
90
4
64
29
14
31
24
1.95
4157--4240
33
2.5
33
100
0
168
44
10
16
28
1.81
5918--6011
45
2.2
43
86
7
129
39
22
4
34
1.74
15499--15531
12
2.5
13
85
14
50
15
3
12
69
1.30
18982--19013
2
17.0
2
87
12
50
46
0
0
53
1.00
19155--19270
39
3.0
38
91
1
169
36
15
15
32
1.89
19346--19374
10
2.9
10
100
0
58
10
27
10
51
1.68
22915--22959
22
2.0
22
95
0
81
24
26
15
33
1.95
27442--27475
3
11.3
3
100
0
68
64
0
35
0
0.94
29546--29603
19
2.9
19
82
5
71
29
20
12
37
1.89
29687--29742
19
2.8
19
83
5
67
30
19
10
39
1.86
29516--29788
141
1.9
141
91
0
447
30
27
11
30
1.92
31348--31385
15
2.7
14
80
11
51
31
0
2
65
1.06
31712--31776
33
2.0
33
87
0
94
58
10
15
15
1.63
33460--33502
20
2.2
20
87
8
61
79
0
16
4
0.90
35895--36009
58
2.0
58
86
3
160
31
13
21
33
1.93

Tables:   1

The End!