Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017831.1 Corchorus olitorius cultivar O-4 contig17864, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118098

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
459--528
36
1.9
36
88
0
104
22
10
7
60
1.53
1047--1456
205
2.0
200
92
3
678
43
8
11
36
1.71
1525--1574
26
2.0
25
92
4
82
56
10
6
28
1.56
1565--1645
39
2.0
40
92
2
137
37
3
8
50
1.51
1717--2244
132
4.0
132
99
0
1038
40
8
10
41
1.69
9070--9149
42
1.9
42
97
0
151
30
5
16
48
1.67
9071--9137
21
3.2
21
64
16
57
28
4
14
52
1.62
29499--29528
3
10.0
3
100
0
60
66
0
33
0
0.92
35957--36125
59
2.9
59
100
0
338
19
28
16
34
1.94
40464--40588
61
2.0
61
89
4
189
44
6
22
27
1.77
49441--49474
18
1.9
18
88
5
52
23
14
0
61
1.33
52666--52884
52
4.1
52
93
3
339
53
21
5
18
1.65
61091--61122
7
4.6
7
100
0
64
15
12
28
43
1.83
63593--63678
36
2.5
35
90
7
131
58
20
3
17
1.54
64104--64133
15
1.9
16
93
6
53
10
30
6
53
1.60
77366--77396
9
3.4
9
95
0
53
25
25
0
48
1.52
90383--90407
10
2.5
10
100
0
50
44
12
20
24
1.85
93685--93721
16
2.3
16
95
0
65
81
0
8
10
0.89
95008--95076
3
23.3
3
88
2
104
66
0
33
0
0.92
103401--103606
103
2.0
103
94
0
358
26
26
13
33
1.93
115063--115112
24
2.1
24
88
0
73
40
24
30
6
1.79
116153--116441
72
4.0
72
94
1
519
18
15
17
47
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116153--116441
143
2.0
143
95
1
517
18
15
17
47
1.83

Tables:   1

The End!