Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017833.1 Corchorus olitorius cultivar O-4 contig17866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21218

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4259--4293
13
2.7
13
100
0
70
17
8
37
37
1.80
12027--12103
25
3.2
25
64
14
70
24
5
23
46
1.72
12003--12125
48
2.6
48
94
1
212
23
3
26
47
1.67
14009--14072
32
2.0
32
90
0
101
26
15
25
32
1.95
15071--15101
15
2.1
15
93
0
53
58
16
6
19
1.59
17997--18037
21
2.0
21
95
0
73
29
17
34
19
1.94
17579--18494
457
2.0
456
88
4
1376
29
17
21
31
1.96
18454--18513
12
5.5
12
75
22
69
30
16
35
18
1.93
18463--18501
9
4.0
9
81
18
51
30
12
35
20
1.90
18454--18538
21
3.9
21
89
4
116
29
14
32
23
1.94
18454--18537
12
7.5
11
73
20
59
29
14
33
22
1.93
19574--19634
24
2.5
24
91
0
95
24
13
39
22
1.90

Tables:   1

The End!