Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017835.1 Corchorus olitorius cultivar O-4 contig17868, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12517
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:910 original size:37 final size:37

Alignment explanation


    Indices: 860--930  Score: 124
    Period size: 37  Copynumber: 1.9  Consensus size: 37

        850 ATATAATTAT

                              *  *               
        860 TCATAAAGTTATGTCTATTTGGAAAGACATGTATTGA
          1 TCATAAAGTTATGTCTATATGAAAAGACATGTATTGA

                                              
        897 TCATAAAGTTATGTCTATATGAAAAGACATGTAT
          1 TCATAAAGTTATGTCTATATGAAAAGACATGTAT

        931 GTTGATCAAG


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  37   32  1.00

ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37


Consensus pattern (37 bp):   
TCATAAAGTTATGTCTATATGAAAAGACATGTATTGA

Found at i:3428 original size:37 final size:37

Alignment explanation


    Indices: 3375--3445  Score: 115
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       3365 ATATAATTAT

                       *      *  *               
       3375 TCATAAAGTTATGTCTATTTGGAAAGACATGTATTGA
          1 TCATAAAGTTACGTCTATATGAAAAGACATGTATTGA

                                              
       3412 TCATAAAGTTACGTCTATATGAAAAGACATGTAT
          1 TCATAAAGTTACGTCTATATGAAAAGACATGTAT

       3446 GTTGATCAAG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  37   31  1.00

ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35


Consensus pattern (37 bp):   
TCATAAAGTTACGTCTATATGAAAAGACATGTATTGA
Done.