Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017839.1 Corchorus olitorius cultivar O-4 contig17872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26200

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1164--1254
27
3.2
27
63
19
67
41
9
9
38
1.72
1164--1286
59
2.1
59
100
0
246
40
8
12
39
1.72
6686--6737
3
17.3
3
79
0
59
5
1
67
25
1.23
6686--6746
12
5.1
12
78
7
61
8
1
67
22
1.27
6676--6777
30
3.5
30
78
8
111
13
3
63
18
1.44
6688--6771
33
2.5
33
88
0
123
10
4
65
19
1.41
6704--6767
12
5.6
12
72
10
53
9
6
65
18
1.42
6698--6764
18
3.9
18
73
11
59
8
5
65
19
1.41
6810--7109
114
2.6
116
90
3
451
31
7
47
14
1.70
6810--7151
114
2.9
112
78
10
348
29
7
49
13
1.70
7132--7182
21
2.4
21
80
0
57
9
11
70
7
1.33
7204--7274
33
2.2
33
84
5
90
18
1
67
12
1.29
7222--7310
33
2.7
33
80
3
81
14
3
68
13
1.33
10702--10738
17
2.2
18
85
9
51
56
27
0
16
1.40

Tables:   1

The End!