Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017840.1 Corchorus olitorius cultivar O-4 contig17873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68743

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--40
2
20.0
2
100
0
80
50
0
0
50
1.00
570--636
2
33.5
2
100
0
134
0
0
49
50
1.00
2512--2650
35
3.7
35
71
19
118
28
15
20
35
1.93
2626--2677
25
2.1
25
96
0
95
28
13
21
36
1.91
2590--2706
60
2.0
58
83
3
144
27
14
21
36
1.92
3328--3361
16
2.1
16
94
0
59
14
11
26
47
1.79
3769--3823
26
2.1
26
93
0
92
60
1
0
38
1.08
3818--3842
10
2.5
10
100
0
50
72
0
8
20
1.10
4847--4926
40
2.0
41
97
2
153
58
7
26
7
1.52
4864--4927
18
3.3
18
68
16
56
60
4
29
4
1.37
5494--6362
330
2.6
326
82
3
1003
33
13
15
36
1.87
5798--7595
607
2.9
623
79
8
1756
32
15
16
35
1.90
8010--9754
333
5.3
333
89
2
2624
37
15
14
32
1.88
8010--9751
665
2.6
662
90
3
2652
37
15
14
32
1.88
11451--13206
333
5.3
331
88
2
2567
37
14
15
32
1.88
14087--14158
36
2.0
36
83
2
92
20
31
20
26
1.98
14125--14189
29
2.2
29
86
0
85
26
33
15
24
1.95
15071--15132
29
2.2
29
85
2
81
24
33
16
25
1.95
15197--15257
29
2.1
29
84
0
77
24
34
16
24
1.95
15050--15454
65
6.3
65
74
5
374
23
30
19
26
1.98
15326--15457
29
4.3
29
75
17
115
22
34
20
22
1.97
15292--15425
36
3.9
36
70
17
115
22
29
22
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15000--15389
129
3.0
129
95
0
683
24
29
18
27
1.98
15615--15721
36
3.2
35
67
22
93
22
28
22
26
1.99
15634--15763
29
4.2
28
72
18
89
22
33
20
23
1.97
15615--15762
65
2.3
65
95
0
260
22
29
21
26
1.99
15304--15916
308
2.0
308
98
0
1190
25
24
18
30
1.98
30018--30043
13
2.0
13
100
0
52
46
15
7
30
1.74
43442--43512
35
2.0
35
100
0
142
33
21
11
33
1.89
49648--49680
3
11.0
3
93
0
57
0
3
30
66
1.06
53418--53446
7
4.1
7
100
0
58
0
0
58
41
0.98
55610--55638
15
1.9
15
100
0
58
41
0
0
58
0.98
56959--56985
6
4.5
6
100
0
54
0
33
0
66
0.92
57574--57614
16
2.5
17
84
7
50
36
0
2
60
1.10

Tables:   1

The End!