Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017842.1 Corchorus olitorius cultivar O-4 contig17875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63822

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40521--40855
166
2.0
171
90
5
529
25
14
17
43
1.86
41812--42138
162
2.0
162
95
1
593
31
18
25
24
1.98
48043--48104
27
2.3
27
85
0
97
33
22
33
9
1.87
54590--54656
24
2.8
24
97
0
125
8
35
20
34
1.84
60370--60540
32
5.3
32
89
1
209
49
15
12
22
1.78
60394--60478
17
5.2
17
67
21
65
47
12
16
23
1.81
60980--61034
20
2.8
20
72
10
67
60
3
7
29
1.41
62270--62336
31
2.2
29
89
5
98
47
13
19
19
1.82
62466--62606
31
4.6
31
78
7
128
31
17
12
38
1.87
62637--62669
16
2.0
17
88
5
50
54
3
0
42
1.15
63610--63714
29
3.6
29
86
2
120
42
12
16
28
1.84

Tables:   1

The End!