Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017844.1 Corchorus olitorius cultivar O-4 contig17877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52112

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1272--1343
29
2.4
29
75
6
74
45
18
16
19
1.85
11559--11912
117
3.0
117
93
2
584
16
24
15
43
1.87
13738--13771
12
2.8
12
90
0
50
73
2
20
2
1.09
19501--19561
30
2.0
30
90
6
97
27
19
3
49
1.64
25503--25554
20
2.6
20
87
6
70
7
28
3
59
1.43
27259--27301
11
3.9
11
81
0
50
39
18
9
32
1.83
27259--27300
22
1.9
22
85
0
57
40
19
7
33
1.78
31432--31462
11
2.8
11
95
0
53
45
12
6
35
1.68
31409--31474
33
2.0
33
85
5
89
42
18
6
33
1.75
45496--45563
29
2.4
28
73
9
68
38
17
0
44
1.49
45652--45698
11
4.2
11
76
15
51
10
14
2
72
1.21
45783--45807
2
12.5
2
100
0
50
52
0
0
48
1.00
47702--47726
13
1.9
13
100
0
50
88
0
12
0
0.53
48554--48608
26
2.0
27
86
10
76
49
27
10
12
1.74
49660--49748
46
1.9
46
90
0
142
43
20
16
19
1.88
51210--52038
333
2.5
322
80
7
870
37
15
13
33
1.87

Tables:   1

The End!