Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017846.1 Corchorus olitorius cultivar O-4 contig17879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 139946
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:788 original size:202 final size:202
Alignment explanation
Indices: 421--795 Score: 522
Period size: 202 Copynumber: 1.9 Consensus size: 202
411 TTCGATTTAA
* * *
421 TTAATTAGAAATAAATTTGGGGAAAAGAAAAAGGAAAAACGATATTAGTAGAGTGAAAAACCCAT
1 TTAATTAGAAATAAATTGGGGGAAAAGAAAAAGGAAAAACGATAATAGAAGAGTGAAAAACCCAT
* * **
486 CAATTCTTTTGGCGTCGAATTATATATTTTTTATGAGTATTGTGGCAATGAATTGAGGAAAAAAA
66 CAATTCTTTTGGCGTCGAATTACATATTTTTTATGAGTATTCTGGCAAAAAATTGAGGAAAAAAA
* *
551 TTTCGGGTCAGTTTTTGAAAAATTTTAGTCGAAATCGATTACTCATCATGGTTGTCTGAATCTTG
131 TTTCGGGTCAGTTTTTGAAAAAGTTTAGCCGAAATCGATTACTCATCATGGTTGTCTGAATCTTG
616 TTTCATT
196 TTTCATT
* * *
623 TTAATTAGAAATGAATTCGGGGGAAAA-AAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCT
1 TTAATTAGAAATAAATT-GGGGGAAAAGAAAAAGGAAAAACGATAATAGAAGAGTGAAAAACCCA
* * *
687 TCAATTTTTTTTGG-GTCGAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTTA-GAACAA
65 TCAA-TTCTTTTGGCGTCGAATTACATATTTTTTATGAGTATTCTGGCAAAAAATTGAGGAA-AA
* * * * *
750 AATTTTTGGGTCATTTTTTGCAAAAGTTTAGCCGAAATCGTTTACT
128 AAATTTCGGGTCAGTTTTTGAAAAAGTTTAGCCGAAATCGATTACT
796 AACCATCACG
Statistics
Matches: 150, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
201 3 0.02
202 131 0.87
203 16 0.11
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (202 bp):
TTAATTAGAAATAAATTGGGGGAAAAGAAAAAGGAAAAACGATAATAGAAGAGTGAAAAACCCAT
CAATTCTTTTGGCGTCGAATTACATATTTTTTATGAGTATTCTGGCAAAAAATTGAGGAAAAAAA
TTTCGGGTCAGTTTTTGAAAAAGTTTAGCCGAAATCGATTACTCATCATGGTTGTCTGAATCTTG
TTTCATT
Found at i:2477 original size:199 final size:203
Alignment explanation
Indices: 2104--2479 Score: 494
Period size: 200 Copynumber: 1.9 Consensus size: 203
2094 TACGAGCATA
* * *
2104 TGAATCTTGTTTCGATTTAATTAATTAGAAATCAATTCGGGGAAAAAAAAAAGGAAAACAATATT
1 TGAATCTTGTTTCGA-TT-ATTAATTAGAAATAAATTCGGGG-AAAAAAAAAGAAAAACAATAAT
* * * *
2169 ATAAATGTGAAAAACCCATCAATTTTTTTGGCATGAAATTATATATTTTTTCTGAGTATTGTAGC
63 AGAAACGTGAAAAACCCATCAATTTTTTTGGCATGAAATTACATATTTTTTCTGAGTATTCTAGC
*
2234 AATAAATTGAGGAAAAGAAATTTTGGGTCAGTTTTTGCAAAATTTTAGTCGATATCGTTTACTCA
128 AAAAAATTGAGGAAAAGAAATTTTGGGTCAGTTTTTGCAAAATTTTAGTCGATATCGTTTACTCA
2299 TCATGGTTTTC
193 TCATGGTTTTC
** *
2310 TGAATCTTGTTTCGA-T-TTAATTAGAAATAAATTCTTGG-AAAAAAAAGAAAAACGATAATAGA
1 TGAATCTTGTTTCGATTATTAATTAGAAATAAATTCGGGGAAAAAAAAAGAAAAACAATAATAGA
* * * * *
2372 AGCGTGAAAAACCCTTCCATTTTTTTGTG-TTG-AATTACATATTTTTTCTGAGTATTCTGGCAA
66 AACGTGAAAAACCCATCAATTTTTTTG-GCATGAAATTACATATTTTTTCTGAGTATTCTAGCAA
* * * *
2435 AAAATTGAGGACAA-AATTTTTGGGTCATTTTTTGCAAAAATTTAG
130 AAAATTGAGGAAAAGAAATTTTGGGTCAGTTTTTGCAAAATTTTAG
2480 CAGAAATCGT
Statistics
Matches: 149, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
198 28 0.19
199 40 0.27
200 45 0.30
201 1 0.01
202 19 0.13
204 1 0.01
206 15 0.10
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (203 bp):
TGAATCTTGTTTCGATTATTAATTAGAAATAAATTCGGGGAAAAAAAAAGAAAAACAATAATAGA
AACGTGAAAAACCCATCAATTTTTTTGGCATGAAATTACATATTTTTTCTGAGTATTCTAGCAAA
AAATTGAGGAAAAGAAATTTTGGGTCAGTTTTTGCAAAATTTTAGTCGATATCGTTTACTCATCA
TGGTTTTC
Found at i:4184 original size:198 final size:198
Alignment explanation
Indices: 3841--4207 Score: 513
Period size: 198 Copynumber: 1.9 Consensus size: 198
3831 TTCGATTTAA
* *
3841 TTAACTAGAAATAAATTCGGGGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTAAAT
1 TTAACTAGAAATAAATTCGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCGTAAAT
* * ** * * * *
3906 TTTTTTGGCGTCGAATTATATATTTTTTCTGTGTATTGTGGCAATAATTGAGGAAAAAAAGTTTT
66 TTTTTTGGCGTCGAATTACATATTTTTTCAGAATATTCTGACAAAAATTGAGGAAAAAAAGTTTC
* *
3971 GGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATTTTGTTTT
131 GGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTCATCATGGTTTTTTGAATTTTGTTTT
4036 GAT
196 GAT
* * * * * *
4039 TTAATTAGAAATAAATTCGGGGAAAAAAGGGAAAACGATAATAGATGCGTGAAAAGCCCTTCAAT
1 TTAACTAGAAATAAATTCGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCGTAAAT
* *
4104 TTTTTTGGCGTTGAATTACATATTTTTTCAGAATATTCTTACAAAAAATTGAGG-AAAAAA-TTT
66 TTTTTTGGCGTCGAATTACATATTTTTTCAGAATATTCTGAC-AAAAATTGAGGAAAAAAAGTTT
*
4167 ACGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACT
130 -CGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACT
4208 AACCATCACG
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
197 3 0.02
198 133 0.91
199 10 0.07
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (198 bp):
TTAACTAGAAATAAATTCGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCGTAAAT
TTTTTTGGCGTCGAATTACATATTTTTTCAGAATATTCTGACAAAAATTGAGGAAAAAAAGTTTC
GGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTCATCATGGTTTTTTGAATTTTGTTTT
GAT
Found at i:5898 original size:198 final size:197
Alignment explanation
Indices: 5549--5915 Score: 492
Period size: 198 Copynumber: 1.9 Consensus size: 197
5539 TTCGATTTAA
* *
5549 TTAACTAGAAATAAATTCGGGGAAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAA
1 TTAACTAGAAATAAATTCGGGGAAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCGTCAA
* * * * *
5614 TTTTTTTGGCGTCGAATTATATATTTTTTCTGTGTATTGTGGAAATAATTGAGGGAAAAAAAATT
66 ATTTTTTGGCGTCGAATTACATATTTTTTCAGAGTATTCTGGAAATAATTGAGGG-AAAAAAATT
* * *
5679 TGGGTTAGTTGTTGCAAATTTTCAGTCGAAATCGTTTACTCATCATGGTTTTTTTAATCTTGTTT
130 TGGGTTAATTGTTGCAAATTTT-AGCCGAAATCGTGTACTCATCATGGTTTTTTTAATCTTGTTT
5744 TGAT
194 TGAT
* * *
5748 TTAATTAGAAATAAATTCGGGG-GAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAA
1 TTAACTAGAAATAAATTCGGGGAAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCGTCAA
* *
5812 ATTTTTTGGTGTTGAATTACATATTTTTTCAGAGTATTCTGGCAAA-AACTTGA-GG-AAAAAAT
66 ATTTTTTGGCGTCGAATTACATATTTTTTCAGAGTATTCTGG-AAATAA-TTGAGGGAAAAAAAT
*
5874 TTCCGGG-TAATTTTTGCAAAATTTTAGCCGAAATCGTGTACT
129 TT--GGGTTAATTGTTGC-AAATTTTAGCCGAAATCGTGTACT
5916 AACCATCACG
Statistics
Matches: 147, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
196 9 0.06
197 23 0.16
198 87 0.59
199 28 0.19
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (197 bp):
TTAACTAGAAATAAATTCGGGGAAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCGTCAA
ATTTTTTGGCGTCGAATTACATATTTTTTCAGAGTATTCTGGAAATAATTGAGGGAAAAAAATTT
GGGTTAATTGTTGCAAATTTTAGCCGAAATCGTGTACTCATCATGGTTTTTTTAATCTTGTTTTG
AT
Found at i:6827 original size:855 final size:855
Alignment explanation
Indices: 53--8075 Score: 11886
Period size: 855 Copynumber: 9.4 Consensus size: 855
43 TAATTAATTA
* *
53 GATAT-AAAATTTG-TTTTACGACCATCTCAATCTTGTTTTGGTTTAATTGGAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
*
116 AACAAATGG-AAAACGATATTAGAAGCGTGAAAAGCCCAGTCAACCTTTTTGGCATTGAATTATA
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC-GTCAATCTTTTTGGCATTGAATTATA
* * * * * *
180 TATTTATTCCAAATATTTTACAAAAAATTGAGTAAAATCTTTTCGGGTCAATTTTTAGCGGAAAC
130 TATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
* ** *
245 CGTGTACTTAACCATCACTGTTTTTTGCTAAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCAT
195 CGTGTAC-T-ACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCAT
* * * * * * *
310 GAATTTTGGCAGAAAGACTCCATAAAATATCTATACTCAATTAACTAAATTTAAGCCTCAATGGA
258 GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGA
* * * *
375 TTTAAGGATTTGTTTTTATGAGCATCTGATTCTTGTTTCGATTTAATTAATTAGAAATAAATTTG
323 TTTAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCG
* * * *
440 GGGAAAAGAAAAAGGAAAAACGATATTAGTAGAGTGAAAAACCCATCAATTCTTTTGGCGTCGAA
388 GGG---A-AAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAA
* * * *
505 TTATATATTTTTTATGAGTATTGTGGCAATGAATTGAGGAAAAAAATTTCGGGTCAGTTTTTGAA
449 TTATATATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAATTTTGGGTCAGTTTTTGCA
* * *
570 AAATTTTAGTCGAAATCGATTACTCATCATGGTTGTCTGAATCTTGTTTC-ATTTTAATTAGAAA
514 AAATTTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGA-TTTAATTAGAAA
*
634 TGAATTCGGGGGAAAAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTT
578 TAAATTCGGGGG---AAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAA-TTTTTTT
* * *
699 GG-GTCGAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTTA-GAACAAAATTTTTGGGTC
639 GGCGTTGAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAA-AAAATTTTCGGGTC
* * *
762 ATTTTTTGCAAAAGTTTAGCCGAAATCGTTTACTAACCATCACGATTTTTGGCTAAAAACGCATT
703 ATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTT
*
827 TCGGAGTGCCGGCTCAATTTTGCAGG-TTTGTTGGCACAAAGACTCATTGAAATATCTTTATTCA
768 TCGGAGTGCCGGCTCAATTTTGCAGGATTT-TTGGCACAAAGACTCCTTGAAATATCTTTATTCA
*
891 TCGAACCAAATGCCAGCCACATTG
832 TCGAACCAAATGTCAGCCACATTG
* * *
915 GATATAAAAATTTATTTTTACGACCATCTCAAACTTGTTTTGATTTAATTATAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
* *
980 AACAAATGGAAAAACAATATTAAAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
*
1045 ATTTTTTCTAAATATTTCACAAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTTGCGGAAAT
131 ATTTTTTCTAAATATTTCAC-AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
** *
1110 CGTG--------TCACGGTTTTCGGCTAAAAACGCGTTTCGGGATCCCGACTTAGTTTTGCATGA
195 CGTGTACTACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGA
*
1167 TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCACATCTAAGCCACAATGGATT
260 TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGATT
* * *
1232 TAAGGATTCGTTTTTACGGTCATCTGAATCTTGTTTCGAATTAATTAATTAGAAATAAATTCGGC
325 TAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCGG-
* * *
1297 GG-GAAAAGGAAAAACGATATTAGAAGTGTGAAAAATCCGTCAATTTTTTTGGTGTCGAATTATA
389 GGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTATA
* *
1361 TATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAAATTTTAGGTCAGTGTTTGCAAAAT
454 TATTTTTTCTGTGTATTGTGGCAATGAATTGAGG-AAAAAAATTTTGGGTCAGTTTTTGCAAAAT
* *
1426 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTTGATTTAATTAGAAATAATT
518 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATAAAT
* * * *
1491 TCGGGGAAAAAAAGGAAAAACGATAATAGAATCGTGAAAAGCCCTTCAATTTTTTTGGTGTTGAA
583 TCGGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAA
*
1556 TTACATATTTTTCCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTGCA
648 TTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTGCA
* * * * * * *
1621 AAATTTTAGCTGAAATCGTGTACTAAACATCACGGTTTTTGGCTAAAAATGAGTTTCAGAGTTCC
713 AAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGTGCC
* *
1686 GGCTTAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATTTTTATTCATCGAACCAAAT
778 GGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAAT
1751 GTCAGCCACATTG
843 GTCAGCCACATTG
* *
1764 GATATAAAAATTTGCTTTTACGACCATCTCAATCTTGTTTTGATTTAATAAGAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
* * *
1829 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCATTTTCGCATAGAATTATAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
*
1894 ATTTTTTCTAAATATTTCACAAAAAATAT-ATTAAAAACTTTTCGGGTC-------A---GAAAT
131 ATTTTTTCTAAATATTTCACAAAAAAT-TGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
* * * * *
1948 CGTGAACTAACCATCACGGTTTTTCCAGCTTAAAACGCGTTTCGGGGTCCCGACTCAGTTTTTCA
195 CGTGTACT-ACCATCACGG-TTTT-CGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCA
* *
2013 TGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACTAAATCTAAACCACAATGG
257 TGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGG
* * *
2078 ATTTAAGGATTT-TTTTTACGAGCATATGAATCTTGTTTCGATTTAATTAATTAGAAATCAATTC
322 ATTTAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTC
* * * * *
2142 GGGGAAAAAAAAAAGG-AAAACAATATTATAAATGTGAAAAACCCATCAATTTTTTTGGCAT-GA
387 GGGG----AAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCG-
* * *
2205 AATTATATATTTTTTCTGAGTATTGTAGCAATAAATTGAGGAAAAGAAATTTTGGGTCAGTTTTT
447 AATTATATATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAA-AAATTTTGGGTCAGTTTTT
* *
2270 GCAAAATTTTAGTCGATATCGTTTACTCATCATGGTTTTCTGAATCTTGTTTCGATTTAATTAGA
511 GCAAAATTTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGA
** * * *
2335 AATAAATTCTTGGAAAAAAAAGAAAAACGATAATAGAAGCGTGAAAAACCCTTCCATTTTTTT-G
576 AATAAATTCGGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTGG
* * *
2399 TGTTGAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGACAAAATTTTTGGGTCATT
641 CGTTGAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATT
* * * *
2464 TTTTGCAAAAATTTAGCAGAAATCGTGTGCTAACCATCACGATTTTTGGCTAAAAACGCTTTTCG
706 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCG
* * * *
2529 GAGTGCCGGCTTAATTTTGCAGG-TTTGTTAGCACAAAGACTCCTTGAAATATCTTTACTCATTG
771 GAGTGCCGGCTCAATTTTGCAGGATTT-TTGGCACAAAGACTCCTTGAAATATCTTTATTCATCG
*
2593 AATCAAATGTCAGCCACATTG
835 AACCAAATGTCAGCCACATTG
*
2614 GATATAAAAATTTGTTTTTACGACCATCTCAATATTGTTTTGATTTAATTAGAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
*
2679 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCCTTGAATTATAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* * *
2744 ATTATTTCTAAATATTTCACAAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAACAGAAAT
131 ATTTTTTCTAAATATTTCAC-AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
* * *
2809 TGTGTACTAACCATCACGGTTTTCGGCTAAAAATGCGTTTCGAGGCCCCGACTCAGTTTTGCATG
195 CGTGTACT-ACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATG
* * *
2874 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTTAATTAACCACATCTAAGCCACAATGGAG
259 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGAT
* * *
2939 TTAAGGCTTTGTTTTTACGATCATCTGAATCTTGTTTTGATTTAATTAATTAGAAATCAATTCGG
324 TTAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCGG
* * **
3004 GGGAAAAAGGAAAAACGATATTAGAAGTGTGAATAATTCGTCAATTTTTTTGGCGTCGAATTATA
389 GGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTATA
* *
3069 TATGTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAACATTTTGGGTCAGTTTTTGCAAAATT
454 TATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAATTTTGGGTCAGTTTTTGCAAAATT
*
3134 TTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTAGTTTCGATTTAATTAGAAATAAATT
519 TTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATAAATT
** * *
3199 CAGGGAAAAAAAAGGAAAAATGATAATA-AATGCGTGAAAATCCCTTCAATTTTTTTTGGCGTTG
584 C-GGGGGAAAAAAGGAAAAACGATAATAGAA-GCGTGAAAAACCCTTCAA-TTTTTTTGGCGTTG
* * * * *
3263 AATCACAT-TTTTTTATGAGTATTCTGGCAAAAAATTGAGAAAAAAATTCT-GGGTTATTTTTTG
646 AATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTG
* * * *
3326 CAAAATTTTAGCCGAAATCGTGTACGTTACCATAACAATTTTTGGGTAAAAACGCGTTTCGGAGT
711 CAAAATTTTAGCCGAAATCGTGTAC-TAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGT
* * *
3391 GCCGGCTCAATTTTGTAGGATTGTTGGCACAAAGACTCCTTGAAATATCTTTATTCCTCGAACCA
775 GCCGGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCA
3456 AATGTCAGCCACATTG
840 AATGTCAGCCACATTG
* * *
3472 GATATAAAAATTTGTTTTTGCGACCATTTCAATCTTGTTTTGATTTAATTAAAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
*
3537 AACAAATGGAAAAACGATATTAGAGGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* * * *
3602 A-TTTTTCTAAATATTTCATAAAAAAATTGAATAAAAACTTTTCAGGTCTGTTTTTAGCGGAAAT
131 ATTTTTTCTAAATATTTCA-CAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
*
3666 CGTGTACTAACCATCACGGTTTTCGGCTAAAAACGTGTTTCGGGGCCCCGACTCAGTTTTGCATG
195 CGTGTACT-ACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATG
* *
3731 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCACATCTAAGCCACAATGCAT
259 ATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGAT
* *
3796 TTAAGGATTTATTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAACTAGAAATAAATTCGG
324 TTAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCGG
*
3861 GGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTAAATTTTTTTGGCGTCGAATTATA
389 GGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTATA
3926 TATTTTTTCTGTGTATTGTGGCAAT-AATTGAGGAAAAAAAGTTTTGGGTCAGTTTTTGCAAAAT
454 TATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAA-TTTTGGGTCAGTTTTTGCAAAAT
* *
3990 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATTTTGTTTTGATTTAATTAGAAATAAAT
518 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATAAAT
* * *
4055 TC-GGGGAAAAAAGGGAAAACGATAATAGATGCGTGAAAAGCCCTTCAATTTTTTTGGCGTTGAA
583 TCGGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAA
* * ** *
4119 TTACATATTTTTTCAGAATATTCTTACAAAAAATTGAGGAAAAAATTTACGGGTCATTTTTTGCA
648 TTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTGCA
* * * *
4184 AAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTCAGAGTTCC
713 AAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGTGCC
*
4249 GGCTTAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAAT
778 GGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAAT
*
4314 GTCAGGCACATTG
843 GTCAGCCACATTG
* *
4327 GATATACAAATTTGCTTTTTACGCCCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGG
1 GATATAAAAATTTG-TTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGG
* *
4392 AAACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTATT
65 AAACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATA
* * **
4457 TATTTTTTCTAAATATTTCACAAAAAATTGAATACAAACTTTTCATGTCAGTTTTTAGCGGAAAT
130 TATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
* * *
4522 CGTG---TACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCTCCAACTTAGTTTTGCATGA
195 CGTGTACTACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGA
* *
4584 TTTTTGGCAGAAAGACTTCTTGAAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATT
260 TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGATT
* * **
4649 TAAGGATTTGTTTTTACGAGCATCTAAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGAG
325 TAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCG-G
* * * * * *
4714 GAAAAAAAAGGCAAAACAATATTAGAATTGTG-AAAACCCGTCAATTTTTTTGGTGTTGAATTAT
389 G-GAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTAT
* * * *
4778 ATATTTTTTCTGAGTATTGTGGCAATGAATTGAGAAAAAAAATTTTGAGTCAGCTTTTGCAAAAT
453 ATATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAATTTTGGGTCAGTTTTTGCAAAAT
*
4843 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTAGAATCTTGTTTCGATTTAATTAGAAATAAAT
518 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATAAAT
** * ** * *
4908 TCTGGGAAAAAAAAAGGAAAAACAATAATAGAAAAGTGAAAACCCCCGTC--TTTTTTTGGCGTT
583 TC-GGG-GGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAA-ACCCTTCAATTTTTTTGGCGTT
* * *
4971 GAATTACATATTTTTTATGAGTATTCTGGAAAAAAAATTGAGGAAAAAATTTTCAGGTCATTTTT
645 GAATTACATATTTTTTCTGAGTATTCTGG-CAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTT
5036 TGCAAAATTTTAGCCGAAATCGTGTACT-ACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAG
709 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAG
* *
5100 TGCCGGCTCAATTTTGCAGGATTGTTGGCACAAAGACTCCTTTAAATATCTTTATTCATCGAACC
774 TGCCGGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACC
5165 AAATGTCAGCCACATTG
839 AAATGTCAGCCACATTG
* * *
5182 GATAT--AAATTTTTTTTTACGACCATTTCAATCTTGTTTTGATTTAATCA-AATATTAATTCGG
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAA-ATTAATTCGG
*
5244 AAACCAATGGAAAAACGATATTAGAAGCGT-AATAAGCCCGTCAATCTTTTTGGCATTGAATTAT
65 AAACAAATGGAAAAACGATATTAGAAGCGTGAA-AAGCCCGTCAATCTTTTTGGCATTGAATTAT
* **
5308 ATATTTTTTCTAAATATTTCACAAAATATCAAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAA
129 ATATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAA
5373 TCGTGTACTGACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCAT
194 TCGTGTACT-ACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCAT
* *
5438 GATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCAATTAACCACATCTAAGCCACAATGGA
258 GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGA
* *
5503 TTTAAGGATTTGTTTTTACGATCATCTAAATCTTGTTTCGATTTAATTAACTAGAAATAAATTCG
323 TTTAAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCG
5568 GGGAAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTA
388 GGG-AAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTA
* * * *
5633 TATATTTTTTCTGTGTATTGTGGAAAT-AATTGAGGGAAAAAAAATTTGGGTTAGTTGTTGC-AA
452 TATATTTTTTCTGTGTATTGTGGCAATGAATTGA-GGAAAAAAATTTTGGGTCAGTTTTTGCAAA
* *
5696 ATTTTCAGTCGAAATCGTTTACTCATCATGGTTTTTTTAATCTTGTTTTGATTTAATTAGAAATA
516 ATTTT-AGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATA
* *
5761 AATTCGGGGG-AAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAAATTTTTTGGTGTT
580 AATTCGGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTT
* * * *
5825 GAATTACATATTTTTTCAGAGTATTCTGGCAAAAACTTGAGGAAAAAATTTCCGGGT-AATTTTT
645 GAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTT
* *
5889 GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGAGT
710 GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGT
* *
5954 TCCGGCTTAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCA
775 GCCGGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCA
6019 AATGTCAGCCACATTG
840 AATGTCAGCCACATTG
*
6035 GATATAAAAATTTGGTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
6100 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* *
6165 ATTTTTTCTAAATATTTCACAAAAAAATTGAGTAAAAACTTTTTGGGTCAGTTTTTAGTGGAAAT
131 ATTTTTTCTAAATATTTCAC-AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
*
6230 CGTGTAC-ACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGCCCCCGACTCAGTTTTGCATGA
195 CGTGTACTACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGA
* * * * * *
6294 TTTTTGGCAGAAAGACTTCTTGAAGTATATTTATTCAATTAACCACATCTAAGCCAAAATGGATT
260 TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGATT
*
6359 TAAGGATTTTTTTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCG
325 TAAGGA--TTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCG
* ** *
6424 GGGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACTCGTCAA-TTTTTTAACATCGAATTAT
388 GGGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTAT
* *
6488 ATATTTTTTCTGTGTATTGTGTCAAT-AATTGAGGAAAAAAATTTTGGGTCAGTTTTTACAAAAT
453 ATATTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAATTTTGGGTCAGTTTTTGCAAAAT
* *
6552 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTTGCTTTAATTAGAAATAAAT
518 TTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATAAAT
* * * *
6617 TCGGGGGAAAAAAGGAAAAACGATAATAGATGCATGAAAAGCCCTTCAATTTTTTTCGCGTTGAA
583 TCGGGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAA
* * * *
6682 TTACATATTTTTTCTGTGTATTCTGGCAAAAAATTAAGGAAAAAATTTTCGGGTCATTTTCTGAA
648 TTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTGCA
* *
6747 AAATTTTAGCCGAAATTGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGTGCA
713 AAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGTGCC
* * *
6812 GGCTCAATTTTGCAGGATTGTTGGCATAAAAACTCCTTGAAATATCTTTATTCATCGAACCAAAT
778 GGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAAT
6877 GTCAGCCACATTG
843 GTCAGCCACATTG
* * *
6890 GATATAAAAATTTGCTTTTACGACGATCTCAATCTTGTTTTAATTTAATTAGAAATTAATTCGGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
** ** * *
6955 AACAAATGGAAAAACGATATTAGAAGCGTCTAAAGCATGTCAATCATTTTGGCATTGAATTAAAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* * *
7020 ATTTATTCTAAATATTTCACAAAAAATTAAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATC
131 ATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAATC
*
7085 GTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTTCGTGGCCCCGACTCAGTTTTGCATGA
196 GTGTACT-ACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGA
* *
7150 TTTTTGGCAGAAAAACTCCTTGAAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATT
260 TTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGATT
** **
7215 TAAGGATTAT-TTTTTACGAAGATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGC
325 TAAGGATT-TGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCG-
** * * * * *
7279 GAAAAAAAAGGCAAAACAATATTAGAAGTGTGAAAACCCCGTCAATTTTTTTGGTGTTGAATTAT
388 GGGAAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTAT
* * * * *
7344 ATATTTTTTCTGAGTATTGTGGCAATGAATTGATGAAAAAAAAAATTTT-GATAAGTTTTAGCAA
453 ATATTTTTTCTGTGTATTGTGGCAATGAATTGA-G--GAAAAAAATTTTGGGTCAGTTTTTGCAA
* *
7408 AATTTTAGTCGAAATCGTTTACTCATCATGG-TTTCTAAATCTTGTTTCGATTTAATTAGAAATA
515 AATTTTAGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATA
* * * *
7472 TATTC-AGGGAAAAAAGGAAAAACTATAATAGAAGAGTGAAACAAACCCTT-AATTTTTTTTGGC
580 AATTCGGGGGAAAAAAGGAAAAACGATAATAGAAGCGTG-AA-AAACCCTTCAA-TTTTTTTGGC
* *
7535 GTTGAATTACATATTTTTTATGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGCCATTT
642 GTTGAATTACATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCA-TT
* *
7600 TTTTGTAAAAATTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCG
706 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCG
** ** *
7665 GAGTGCCGGCTCAATTTTGCAGGATAGTTGGCACAAAGAAACCTTGAAATATCTTTATTCATCAA
771 GAGTGCCGGCTCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGA
7730 ACCAAATGTCAGCCACATTG
836 ACCAAATGTCAGCCACATTG
* * * *
7750 GATATAAAAATTTTTTTTTACGAACATCTCAATCTTGTTTTGATTTAATTAAAAATTAATTCAGA
1 GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
* * * *
7815 AACTAATGGGAAAATGATATTAGAAGTGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
66 AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* *
7880 ATTTTATCTAAATATTTCACAAAAAAATTGAGTAAAAACTTTTCGGGTCAATTTTTAGCGGAAAT
131 ATTTTTTCTAAATATTTCAC-AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAAT
* *
7945 CGTGTAC-AGCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGTCCCCGACTCAGTTTTGCATGA
195 CGTGTACTACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGA
* * * *
8009 TTTTTCGGCAGAAAGACTTCTTCAAATATCTATATTTAATTAACAAAATCTAAGCCACAATGGAT
260 TTTTT-GGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGAT
8074 TT
324 TT
8076 TTGGCTAAAA
Statistics
Matches: 6495, Mismatches: 562, Indels: 210
0.89 0.08 0.03
Matches are distributed among these distances:
838 9 0.00
847 8 0.00
848 87 0.01
849 480 0.07
850 348 0.05
851 327 0.05
852 469 0.07
853 409 0.06
854 474 0.07
855 1045 0.16
856 970 0.15
857 614 0.09
858 314 0.05
859 294 0.05
860 397 0.06
861 70 0.01
862 5 0.00
863 7 0.00
864 98 0.02
865 70 0.01
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (855 bp):
GATATAAAAATTTGTTTTTACGACCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGGA
AACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
ATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGCGGAAATC
GTGTACTACCATCACGGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGAT
TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCAATTAACCAAATCTAAGCCACAATGGATTT
AAGGATTTGTTTTTACGATCATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCGGGG
AAAAAAGGAAAAACGATATTAGAAGTGTGAAAAACCCGTCAATTTTTTTGGCGTCGAATTATATA
TTTTTTCTGTGTATTGTGGCAATGAATTGAGGAAAAAAATTTTGGGTCAGTTTTTGCAAAATTTT
AGTCGAAATCGTTTACTCATCATGGTTTTTTGAATCTTGTTTCGATTTAATTAGAAATAAATTCG
GGGGAAAAAAGGAAAAACGATAATAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTA
CATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTGCAAAA
TTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGAGTGCCGGC
TCAATTTTGCAGGATTTTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAATGTC
AGCCACATTG
Found at i:9977 original size:854 final size:854
Alignment explanation
Indices: 8071--10389 Score: 3699
Period size: 854 Copynumber: 2.7 Consensus size: 854
8061 AGCCACAATG
* *
8071 GATTTTTGGCTAAAAACGCATTTCGGAGTGCCGGATCAATTTTGCAGGATTGTTGGCACAAAGAA
1 GATTTTTGGCTAAAAACGCGTTTCGGAGTGCCGGCTCAATTTTGCAGGATTGTTGGCACAAAGAA
8136 TCCTTGAAATATCTTTATTCATCGAACCAAATGTCAGCCACATTGGATATAAAAATTTGCTTTTA
66 TCCTTGAAATATCTTTATTCATCGAACCAAATGTCAGCCACATTGGATATAAAAATTTGCTTTTA
*
8201 CGACCATCTCAATCTTGTTTTGATTTAATTAGAAACTAATTCGGAAACAAATGGAAAAAAGATAT
131 CGACCATCTCAATCTTGTTTTGATTTAATTAGAAACTAATTCGGAAACAAATGGAAAAACGATAT
8266 TAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTAAATATTTTTTTCTAAATATTTCA
196 TAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTAAATA-TTTTTTCTAAATATTTCA
8331 CAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATCGTGTACTAACCATCACGGT
260 CAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATCGTGTAC-AACCATCACGGT
8396 TTTCGGCTAAAAACGCGTTTCGGTGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGATTCC
324 TTTCGGCTAAAAACGCGTTTCGG-GCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGATTCC
*
8461 TTGAAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATTTAAGGATTAGTTTTTACGA
388 TTGAAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATTTAAGGATTTGTTTTTACGA
* * *
8526 AGATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTTGCGAAAAAAAGGCAAAACAATA
453 ATATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGGGAAAAAAAGGCAAAACAATA
*
8591 TTAGAAGTGTGAAAACCCCGTCAATTTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTG
518 TTAGAAGTGTGAAAAACCCGTCAA-TTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTG
* * *
8656 GCAATGAATTGA-CAAAAAAAATTTGGATCAGTTTTAGTAAAATTTTAGTCGAAATCGTTTACTC
582 GCAAT-AATTGAGGAAAAAAATTTTGGATCAGTTTTAGCAAAATTTTAGTCGAAATCGTTTACTC
8720 ATCATGGTTTCTGAATCTTGTTTCGATTTAATTAGAAATATATTCAGGGAAAAAAAAGGAAAAAC
646 ATCATGGTTTCTGAATCTTGTTTCGATTTAATTAGAAATATATTCAGGGAAAAAAAAGGAAAAAC
*
8785 AATAATAGAAGAGTGAAACAAACCCTCAATTTTTTTGGCGTTGAATTACATATTTTTTATGAGTA
711 AATAATAGAAGAGTGAAACAAACCCTCAATTTTTTTGGAGTTGAATTACATATTTTTTATGAGTA
*
8850 TTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTTTTGTAAAAATTTAGCCGAAACCG
776 TTCTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCA-TTTTTCTGTAAAAATTTAGCCGAAACCG
*
8915 TGTACTAATCATCAC
840 TGTACTAACCATCAC
* *
8930 GATTTTTGGCTAAAAACGCGTTTCGGAGTGCCGGCTCAATTTTGTAGGATAGTTGGCACAAAGAA
1 GATTTTTGGCTAAAAACGCGTTTCGGAGTGCCGGCTCAATTTTGCAGGATTGTTGGCACAAAGAA
* * *
8995 ACCTTGAAATATCTTTATTCATCGAACCAAATGCCAGCCACATTGGATATAAAAATTTGTTTTTA
66 TCCTTGAAATATCTTTATTCATCGAACCAAATGTCAGCCACATTGGATATAAAAATTTGCTTTTA
* *
9060 CGACCATCTCAATCTTGTTTTGATTTAATTAAAAATTAATTCGGAAACAAATGGAAAAACGATAT
131 CGACCATCTCAATCTTGTTTTGATTTAATTAGAAACTAATTCGGAAACAAATGGAAAAACGATAT
* * * *
9125 TAGAAACGTGAAAAGCCTGTCAATCTTTTTGGCATTGAATTATATATTTTTTCTAAATATTTCAC
196 TAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTAAATATTTTTTCTAAATATTTCAC
* *
9190 AAAAAAATTGAGTAAAAACTTTTTGGGTCAGTTTTTAGCGGAAATCGTGTAC-ACCATCACGGTT
261 -AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATCGTGTACAACCATCACGGTT
* * * *
9254 TTCGGCTAAAAACGCGTTTCGGGCCCCCAACTCAGTTTTACATAATTTTTGGCAGAAAGATTTCT
325 TTCGGCTAAAAACGCGTTTCGGG-CCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGATTCCT
* * * * * *
9319 TGAAATATCTTTATTCAATTAACCACATCTAAGCCAAAATGGATTTAAGGATTTTTTTTTACGAT
389 TGAAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATTTAAGGATTTGTTTTTACGAA
** * *
9384 TATCTGAATCTTGTTTCGATTTAATTAATTAGAAATAAATTCGGGAAAAAAAGGAAAAACGATAT
454 TATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGGGAAAAAAAGGCAAAACAATAT
**** * * *
9449 TAGAAGTGTGAAAAACCCGTCAATTTTTTAACATCGAATTATATATTTTTTCTGTGTATTGTGTC
519 TAGAAGTGTGAAAAACCCGTCAATTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGC
* *
9514 AATAATTGAGGAAAAAAATTTTGGGTTAGTTTTTA-CAAAATTTTAGTCGAAATCGTTTACTACA
584 AATAATTGAGGAAAAAAATTTTGGATCAG-TTTTAGCAAAATTTTAGTCGAAATCGTTTACT-CA
* * * * *
9578 TCATGGTTTTTTGAATCTTGTTTTGCTTTAATTAGAAATATATTC-GGGGAAAAAAAGGAAAAAT
647 TCATGG-TTTCTGAATCTTGTTTCGATTTAATTAGAAATATATTCAGGGAAAAAAAAGGAAAAAC
* * * *
9642 GATAATAGAAGCA-TG-AA-AAGCCCTTCAA-TTTTTT-GAGTTGAATTACATATTTTTTCTGTG
711 AATAATAGAAG-AGTGAAACAAACCC-TCAATTTTTTTGGAGTTGAATTACATATTTTTTATGAG
*
9702 TATTCTGGCAAAAAAAATTGAGGAAAAAATTTTCGGGTCA-TTTTCTG-AAAAATTTTAGCCTAA
774 TATTCTGGC--AAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTCTGTAAAAA-TTTAGCCGAA
*
9765 ATCGTGTACTAACCATCAC
836 ACCGTGTACTAACCATCAC
* *
9784 GATTTTTGGCTAAAAACGCGTTTCAGAGTGCCGGCTCAATTTTGCAGGATTGTTGGCACAAAGAC
1 GATTTTTGGCTAAAAACGCGTTTCGGAGTGCCGGCTCAATTTTGCAGGATTGTTGGCACAAAGAA
*
9849 TCCTTGAAATATCTTTATTCATCGAACCAAATATCAGCCACATTGGATATAAAAATTTGCTTTTA
66 TCCTTGAAATATCTTTATTCATCGAACCAAATGTCAGCCACATTGGATATAAAAATTTGCTTTTA
*
9914 CGACCATCTCAATCTTGTTTTGATTTAATTGGAAACTAATTCGGAAACAAATGGAAAAACGATAT
131 CGACCATCTCAATCTTGTTTTGATTTAATTAGAAACTAATTCGGAAACAAATGGAAAAACGATAT
9979 TAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTAAATATTTTTTCTAAATATTTCAC
196 TAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTAAATATTTTTTCTAAATATTTCAC
* * *
10044 AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATCGTCTACTAACCA-AACAGTT
261 AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATCGTGTAC-AACCATCACGGTT
*
10108 TTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCT
325 TTCGGCTAAAAACGCGTTTC-GGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGATTCCT
* *
10173 TGAAATAGCTATATTTAATTAACCAAATCTAAGCCACAATGGATTTAAGGATTTGTTTTTACGAG
389 TGAAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATTTAAGGATTTGTTTTTACGAA
10238 TATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGGGAAAAAAAGGCAAAACAATAT
454 TATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGGGAAAAAAAGGCAAAACAATAT
*
10303 TAGAAGTGTGAAAAACCCGTCATTTTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGG
519 TAGAAGTGTGAAAAACCCGTCA-ATTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGG
* * *
10368 CAAAGAATTAAGGGAAAAAATT
583 C-AATAATTGAGGAAAAAAATT
10390 CCGGGCCACT
Statistics
Matches: 1336, Mismatches: 108, Indels: 35
0.90 0.07 0.02
Matches are distributed among these distances:
853 53 0.04
854 511 0.38
855 59 0.04
856 131 0.10
857 251 0.19
858 55 0.04
859 276 0.21
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.35
Consensus pattern (854 bp):
GATTTTTGGCTAAAAACGCGTTTCGGAGTGCCGGCTCAATTTTGCAGGATTGTTGGCACAAAGAA
TCCTTGAAATATCTTTATTCATCGAACCAAATGTCAGCCACATTGGATATAAAAATTTGCTTTTA
CGACCATCTCAATCTTGTTTTGATTTAATTAGAAACTAATTCGGAAACAAATGGAAAAACGATAT
TAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAATTAAATATTTTTTCTAAATATTTCAC
AAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGGAAATCGTGTACAACCATCACGGTTT
TCGGCTAAAAACGCGTTTCGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGATTCCTTG
AAATATCTATATTTAATTAACCAAATCTAAGCCACAATGGATTTAAGGATTTGTTTTTACGAATA
TCTGAATCTTGTTTAAATTTAATTAATTAGAAATAAATTCGGGAAAAAAAGGCAAAACAATATTA
GAAGTGTGAAAAACCCGTCAATTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAA
TAATTGAGGAAAAAAATTTTGGATCAGTTTTAGCAAAATTTTAGTCGAAATCGTTTACTCATCAT
GGTTTCTGAATCTTGTTTCGATTTAATTAGAAATATATTCAGGGAAAAAAAAGGAAAAACAATAA
TAGAAGAGTGAAACAAACCCTCAATTTTTTTGGAGTTGAATTACATATTTTTTATGAGTATTCTG
GCAAAAAATTGAGGAAAAAATTTTCGGGTCATTTTTCTGTAAAAATTTAGCCGAAACCGTGTACT
AACCATCAC
Found at i:10199 original size:320 final size:323
Alignment explanation
Indices: 9763--10356 Score: 725
Period size: 320 Copynumber: 1.8 Consensus size: 323
9753 ATTTTAGCCT
* * * ** *
9763 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCAGAGTGCCGGCTCAATTTTG
1 AAATCGTCTACTAACCAACACGATTTTCGGCTAAAAACGCGTTTCAGAGCCCCGACTCAATTTTG
* * * * *
9828 CAGGATTGTTGGCACAAAGACTCCTTGAAATATCTTTATTCATCGAACCAAATATCAGCCACATT
66 CAGGATTGTTGGCACAAAGACTCCTTGAAATAGCTATATTAATCGAACCAAATATAAGCCACAAT
* *
9893 GGATATAAAAATTTGCTTTTACGACCATCTCAATCTTG-TT-TTGATTTAATTGGAAACT-AATT
131 GGATATAAAAATTTGCTTTTACGACCATCTCAATCTTGTTTATTGAATTAATTAGAAA-TAAATT
* * *
9955 C-GGAAACAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCATTTTGGCATTGAAT
195 CGGGAAA-AAAAGGAAAAACAATATTAGAAGCGTGAAAAACCCGTCAATCATTTTGGCATTGAAT
10019 TAAATATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGG
259 TAAATATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGG
* * *
10084 AAATCGTCTACTAACCAA-AC-AGTTTTCGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTT
1 AAATCGTCTACTAACCAACACGA-TTTTCGGCTAAAAACGCGTTTCAGAGCCCCGACTCAATTTT
* * * * *
10147 GCATGATTTTTGGCAGAAAGACTCCTTGAAATAGCTATATTTAAT-TAACCAAATCTAAGCCACA
65 GCAGGATTGTTGGCACAAAGACTCCTTGAAATAGCTATA-TTAATCGAACCAAATATAAGCCACA
* ** * ** * *
10211 ATGGATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTAAATTTAATTAATTAGAAATAA
129 ATGGATATAAAAATTTGCTTTTACGACCATCTCAATCTTGTTT--ATTGAATTAATTAGAAATAA
* * * ** **
10276 ATTCGGGAAAAAAAGGCAAAACAATATTAGAAGTGTGAAAAACCCGTCATTTTTTTTGGTGTTGA
192 ATTCGGGAAAAAAAGGAAAAACAATATTAGAAGCGTGAAAAACCCGTCAATCATTTTGGCATTGA
*
10341 ATTATATATTTTTTCT
257 ATTAAATATTTTTTCT
10357 GAGTATTGTG
Statistics
Matches: 225, Mismatches: 40, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
319 1 0.00
320 118 0.52
321 22 0.10
323 1 0.00
324 78 0.35
325 5 0.02
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (323 bp):
AAATCGTCTACTAACCAACACGATTTTCGGCTAAAAACGCGTTTCAGAGCCCCGACTCAATTTTG
CAGGATTGTTGGCACAAAGACTCCTTGAAATAGCTATATTAATCGAACCAAATATAAGCCACAAT
GGATATAAAAATTTGCTTTTACGACCATCTCAATCTTGTTTATTGAATTAATTAGAAATAAATTC
GGGAAAAAAAGGAAAAACAATATTAGAAGCGTGAAAAACCCGTCAATCATTTTGGCATTGAATTA
AATATTTTTTCTAAATATTTCACAAAAAATTGAGTAAAAACTTTTCGGGTCAGTTTTTAGAGG
Found at i:12616 original size:330 final size:328
Alignment explanation
Indices: 11153--14977 Score: 1934
Period size: 330 Copynumber: 11.6 Consensus size: 328
11143 CAATGTCGCT
* * *** * * * * *
11153 AAAAATTGACCCGAAATA-TTTTCCTCAATTTTAAACCAATATACTCAGAGAATATATATAATTA
1 AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
* * * *
11217 AACGCCAATAATATTGGAGGACTCTTCACGCTTTTAATATCGTTTTTTTCATATTTTTCTAAACT
66 AACGCCAA-AAGATTGGAGGACTTTTCACGCTTTTAATATCG--TTTTTCATATTTTTCTGAATT
* * * *
11282 AATTTCTAATTAAATCAAAACAAGATTCAGATGCTC-----GAC-AATACTTAAATTCAATGTGG
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGG
* * * *
11341 CTGAGATTTGATTAGAAGAATATAGATGTTTCAAGAAGTCTCTG-CGCCAAAAATCATGCAAAAC
193 CTGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTC-GACGCCAAAAATCATGCAAAAC
* * * * * * *
11405 TAAGTCGGGGTCCCGAAACACGTTTTTAGCCAAAAACCGTGATGATCAATATACGATTTCGGTTA
257 TGAG-CGGGG-CCTGGAACGCGTTTTTAGCCAAAAACCGTGATGATTAATACACGATTTCGGCTA
11470 AAATTTTGC
320 AAATTTTGC
* * * * *
11479 AAAAAAAATGACCCAAAATATTTTTCCGTAAATTTATGG-TATAAATACTCATAAAATATATTTA
1 --AAAAATTGACCCAAAAAATTTTTCC-TCAATTTTTGGCTA-AAATACTCATAAAATATATATA
* * * *
11543 ATTTAACACCAAAAAGATCGGAGGACTTTTCACGATTTTAATATCGTTTTTCATGTATATTTTTC
62 ATTCAACGCC-AAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTC----ATATTTTTC
* * * **
11608 CGAATTAATTTCTAATTATATCAAAACAAGATTCAGATGCTCATAAAAACAAATTTTTAAATCCA
122 TGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCA
* * * * *
11673 ATGTAGCTGAGATTTGATTAGATGAATATG-GATATCTCAAAGAGTCTTGGCGCCAAAAATCATG
187 ATGTGGCTGAGATTTGATTAGATGAATA-GAGATATTTCAAGGAGTCTCGACGCCAAAAATCATG
* * * ** *
11737 CATAACTTAGCCAGGGCCCTGGAATACGTTTTTAGCCAAGAAATCC-TGATGATTATTACACGAT
251 CAAAACTGAG-C-GGGGCCTGGAACGCGTTTTTAGCCAA-AAA-CCGTGATGATTAATACACGAT
*
11801 TTCGGCTAGAATTTTGC
312 TTCGGCTAAAATTTTGC
*** * * * *
11818 AAAAATTGA-CTGGAAAGTTATTTCCTCAATTTTTAGCTACAATAATCATAAAAAATATATATAA
1 AAAAATTGACCCAAAAAATT-TTTCCTCAATTTTTGGCTAAAATACTCAT--AAAATATATATAA
* * * * * *
11882 TTCAATGCCGAAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGTTTTTCCTATTATTTTCTGA
63 TTCAACGCC-AAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATA-T-TTTTCTGA
* * * * *** *
11947 ATTAATTTCTAATTCAATTGAAACATGATTCGGATG--CATATTTTACAAATCTTTAAATCCAAT
125 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATA-AAAACAAATCCTTAAATCCAAT
* * * * * * *
12010 GTGGATGAGATTTGGTTAGATTAATATACATATTTCAAGGAGTCTCGGCACCAAAAATCATGCAA
189 GTGGCTGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAA
* * * ** *
12075 CACTGAACCGGGGCCCTGGAATGCGTTTTTAATCAAAAACCGTGATTCGACTAACATACACGATT
254 AACTG-AGCGGGG-CCTGGAACGCGTTTTTAGCCAAAAACCGTGA-T-GA-TTA-ATACACGATT
* *
12140 TCGGCTAATATTTTAC
313 TCGGCTAAAATTTTGC
* * * * *
12156 AAAAATT-AACCAGAAATAGTTTTCCTCGATTTTTGTCTAAAATACTCATAAAATATATATAATT
1 AAAAATTGACCCA-AAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATT
* * * * * * * *
12220 CAACTTCAAAAATATTAGAGGACTTTTCATGTTTTTAATATCGTCTTTCATTTTTTTCTGAATTA
65 CAAC-GCCAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTA
* * * * *
12285 ATTTCTAATTAAATCGAAA-TAGTTTCAGATTCTCATAAAAATAAATCCTTAAATGCAATGTGGC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGC
*
12349 TGAGATTTGATTAGATGAATAGATATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTG
194 TGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTG
* * * *
12414 AGCGGGAGCCTCGAAGCGCGTTTTTAG-CAAAAACTCTTGATGGTTAGTACACGATTTCGGCTAA
259 AGCGGG-GCCTGGAA-CGCGTTTTTAGCCAAAAAC-CGTGATGATTAATACACGATTTCGGCTAA
*
12478 CATTTTGC
321 AATTTTGC
* * * *
12486 AAAAA-AGTACCCAAAAAATTTTTTCTTAATTTTTGGCTAAAATACTCATGAAATATATATAATT
1 AAAAATTG-ACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATT
* * * *
12550 TAACGCCAAAAGGATTTGAGAACTTTTCACGCTTTTCATATCGTTTTTCATATTTTTCTGAATTA
65 CAACGCCAAAA-GATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTA
* *
12615 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGC
* * * *
12680 TGAGATTTGATTAGATGAATATG-GATATCTCAAGTAGTCT-TAGCGCCAAAAATCATGCAAATC
194 TGAGATTTGATTAGATGAATA-GAGATATTTCAAGGAGTCTCGA-CGCCAAAAATCATGCAAAAC
* * * * * * *
12743 TGACCCGGGACCCTGGAACGCGTTTTTAGTCAAAAAACCGTGGTGATTATTACATGATTTCGACT
257 TGA-GCGGG-GCCTGGAACGCGTTTTTAG-CCAAAAACCGTGATGATTAATACACGATTTCGGCT
12808 AAAATTTTGC
319 AAAATTTTGC
* ** * *
12818 AAAATTTGACCGGAAAAATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTC
1 AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
* * * ** * * * * *
12883 AACACCAAAAATATTGAAGGGTTTTTTACACTTCTAATATCGTTTTTCCTACTTTTTCCGAA-TA
66 AACGCC-AAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATA-TTTTTCTGAATTA
* ** ** * * * * * ** * **** * * *
12947 ATTACATCCTCCCATTCAAAATAAG-TTATACATTTTAACT-TTTGC-AGTCTTTCAAAAT-AAA
129 ATTTC-TAAT-TAAATCGAAACAAGATT-CAGATGCTCA-TAAAAACAAATCCTT--AAATCCAA
*** ** ** * ** * * * * **
13008 TGAAAC--A-ATTACAAAACCAATGCAATATGTACTTTTTTTCCATA-TA-TACCCCTGAGTGTT
188 TGTGGCTGAGATTTGATTA--GATG-AATA-G-A-GATATTT-CA-AGGAGT--CTC-GA-CGCC
* * * * * * * * ** * * *
13068 AATTAAT-GTGGTTAAACCTGTAAG-TGGTCTTGGAA--AG---TT-GGGAAGAGA--GAGAAGA
241 AA-AAATCAT-G-CAAAACTG--AGCGGGGCCTGGAACGCGTTTTTAGCCAA-AAACCGTGATGA
* ** **** *
13123 TTTATTA-ATTAATTTTTTATAAAAATTTTTGG
300 -TTAATACA-CGATTTCGGCT-AAAA-TTTTGC
* * *** * * * *
13155 AAGTGTAATT-ATGCC-----ATTTTAAGTGAGTTTTT-ACT-AAAT--T--TAAAACTA-A-CT
1 AA---AAATTGA-CCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAA-TATATAT
** ** * * * * * ** * * * **
13206 AA-TCATTGCC--TTG-TTCTGCGTAATATT----CTTAGAGTATCACTTATTTTGA-ATGGGGG
61 AATTCAACGCCAAAAGATT-GGAGGACTTTTCACGCTTTTAATAT--CGT-TTTTCATAT---TT
**** * * * * * * *
13262 GGGGGGAGTAATTTCTAATTAAATTGAAATAAAATTTAGATGCTCGTAAAAACAAATCCTTAAAT
119 TTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAAT
** * * *
13327 CCAATGTGGCTGTTATTTTGATTAGATGAATATAGATAGTTCAAGGAGTCTTGGCGGCTGGCGCT
184 CCAATGTGGCTGAGA-TTTGATTAGATGAATAGAGATATTTCAAGGAGTC-T--CGAC--GC-C-
* * * * * * *****
13392 AAAAATCATGCAATACTGACCCGAGGTCCCGGAATGCATTTTTAG-CAAAAAAAAAAAGTGA-TA
241 AAAAATCATGCAAAACTGA-GCG-GGGCCTGGAACGCGTTTTTAGCCAAAAACCGTGA-TGATTA
* * *
13455 TTACACGATTTCAGCTAATATTTTGC
303 ATACACGATTTCGGCTAAAATTTTGC
* * * * * *
13481 AAAAAATGACCCGAAATATTTTTCCTTAATTTTTAG-AAATAATACTCATAAAA-ATTATATAAT
1 AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAA-AATACTCATAAAATA-TATATAAT
* * * * * * **
13544 TCAACACCAAAAATATTGAAGGGCTTTTCACGCTTCTAATACCGTTTTTCAT-TTTTTCCCAAAT
64 TCAACGCC-AAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTT-CTGAAT
* * **
13608 TAATTTCTAATTTAAA-CGAAACATGATTCAAATGCT--T-GTAA-AAA-----AAA--C-----
127 TAATTTCTAA-TTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGT
* * * * * * *
13656 GGCTGGGATTTGGTTAGATGAATATAGATATTTCAAGCAATCAT-GGCGCCAAAAA-CATTCAAA
191 GGCTGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTC-TCGACGCCAAAAATCATGCAAA
* ** * * * * *
13719 ACTGAACCGGACCCCGGAACGCGTTTTCAGCCAAAAACCGTGATGATTATTGCACGATTTCAGCT
255 ACTG-AGCGGGGCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGATTAATACACGATTTCGGCT
13784 AAAATTTTGC
319 AAAATTTTGC
* * * * * * * * *
13794 AAAAATTTACCCGAAAGATATTTCCTCAATTTTTAGCCATAATACTCTTAAAAAATATATAATT-
1 AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
* * *
13858 AATCGCCAAAA-ATATTGATGGGCTTTTGACGCTTTTAATATCGTTTTTCATATTTTTTCTGAAT
66 AA-CGCCAAAAGAT-TGGA-GGACTTTTCACGCTTTTAATATCGTTTTTCATA-TTTTTCTGAAT
* * * *
13922 TAATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATGCAATGTG
127 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTG
* * * * *
13987 GCTAAGATTTTATTAGATGAATATAGATATTTTAAGGAGTGTC-AGCGCCAAAAATCATGCAAAA
192 GCTGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTCGA-CGCCAAAAATCATGCAAAA
* * * ** *
14051 CTTAGC-TGG--T-G--C-C-----T---C-AAAACGCGT--T-AGTAGCCACACGATTTTGGCT
256 CTGAGCGGGGCCTGGAACGCGTTTTTAGCCAAAAAC-CGTGATGATTA-ATACACGATTTCGGCT
14097 AAAATTTTGC
319 AAAATTTTGC
* * *
14107 AAAAAATGACCCGAAAAAA-TTTTCCTTAATTTTTGGATAAAATACTCATAAAATATATATAATT
1 AAAAATTGACCC-AAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATT
* * *
14171 TAACGGCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATA-TTTTCAGAATTA
65 CAAC-GCCAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTA
* ** *
14235 ATTTATAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATTCTTAAATCCAATGTGGC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGC
* * * * * *
14300 TAAGATTTGATTAGATGAAT----ATA-GTCAAGGAGTCTTGACACCAAAAATCATGGAAAAAAA
194 TGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTCGACGCCAAAAATCAT-G-CAAAAC
** * * * * ** * * *
14360 AAAGCCGGGGCCCCGGAACACTTTTTTATCCAAAAACTATGATGGTTATTACATGATTTCGGCTA
257 TGAG-CGGGG-CCTGGAACGCGTTTTTAGCCAAAAACCGTGATGATTAATACACGATTTCGGCTA
*
14425 AAATTTTGT
320 AAATTTTGC
* * * *
14434 AAAAATTGAGCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATTAAAA-ATATATAAAT
1 AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCA-TAAAATATATAT-AAT
* * * * * **
14498 T-AACGCCAAAAAAATTGAAGGGCTTTTGACG-TTTCTAATATCGTTTTTCCTACTTTTTCCAAA
64 TCAACGCC-AAAAGATTGGAGGACTTTTCACGCTTT-TAATATCGTTTTTCATA-TTTTTCTGAA
* * **
14561 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCTTAAATTTAATGT
126 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGT
* * * *
14626 GGATGAGATTTGATTAGATGAATATAGATA--T---GTAGTCTCGGAC-CCAAAAATCTTGCAAA
191 GGCTGAGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTC-GACGCCAAAAATCATGCAAA
* * * * *
14685 ATTGAGCCGGGTCCCTGGAACGCGTTTTTAGCAAAAAAAAACCGTGATGGTTTGTTAGTACACGA
255 ACTGAG-CGGG-GCCTGGAACGCGTTTTTAGC---CAAAAACCGTGAT-G---ATTAATACACGA
**
14750 TTTCGGC-ATAAATTTAAC
311 TTTCGGCTA-AAATTTTGC
* * * * * *
14768 AAAAA-TGACACGAAAGATTTCTCCTCAATTTTTGGCTGAAATACTCATCAAA-ATATATAATTC
1 AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
* * * * * * *
14831 AAAGCCAAAAAGATTTGA-GAGCTTTTTATGCTTTTAATATCGTATTTCTTATTTTTCTAAATTA
66 AACGCC-AAAAGATTGGAGGA-CTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTA
* * * * * * *
14895 ATTCCTAATCAAATCGAAACAAGATTTAGATGGTCGTAAAAACAAATTCTTAAATCCAATGTTGC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGC
*
14960 TGAGATTTGGTTAGATGA
194 TGAGATTTGATTAGATGA
14978 TGTAAAGTAT
Statistics
Matches: 2651, Mismatches: 608, Indels: 473
0.71 0.16 0.13
Matches are distributed among these distances:
306 21 0.01
307 5 0.00
308 6 0.00
309 1 0.00
310 2 0.00
311 93 0.04
312 30 0.01
313 236 0.09
314 60 0.02
315 12 0.00
316 4 0.00
317 3 0.00
318 6 0.00
319 2 0.00
320 11 0.00
321 37 0.01
322 23 0.01
323 46 0.02
324 24 0.01
325 12 0.00
326 23 0.01
327 143 0.05
328 63 0.02
329 130 0.05
330 265 0.10
331 222 0.08
332 233 0.09
333 108 0.04
334 205 0.08
335 136 0.05
336 127 0.05
337 35 0.01
338 228 0.09
339 51 0.02
340 15 0.01
341 8 0.00
342 10 0.00
343 14 0.01
345 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (328 bp):
AAAAATTGACCCAAAAAATTTTTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
AACGCCAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAAT
TTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATGTGGCTG
AGATTTGATTAGATGAATAGAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAG
CGGGGCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGATTAATACACGATTTCGGCTAAAATTT
TGC
Found at i:14090 original size:313 final size:312
Alignment explanation
Indices: 13771--14656 Score: 943
Period size: 313 Copynumber: 2.8 Consensus size: 312
13761 ATGATTATTG
* * * * *
13771 CACGATTTCAGCTAAAATTTTGCAAAAATTTACCCGAAAGATATTTCCTCAATTTTTAGCCATAA
1 CACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAA
*
13836 TACTCTTAAAAAATATATAATTAATCGCCAAAAATATTGATGGGCTTTTGACGCTTTTAATATCG
66 TACTCTTAAAAAATATATAATTAA-CGCCAAAAAAATTGA-GGGCTTTTGACGCTTTTAATATCG
* *
13901 TTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAA
129 TTTTTCATA-TTTTTCAGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* * * *
13966 CAAATTCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTTAAGGAGTGTCA
193 CAAATTCTTAAATCCAATGTGGCTAAGATTTGATTAGATGAATATAGATA-TTCAAGGAGTCT-A
* * *** * * * *
14031 G-CGCCAAAAATCAT-G-CAAAACTTAGCTGGTGCCTCAAAACGCGTTAGTAGCC-A
256 GACACCAAAAATCATGGAAAAAAAAAAGCCGGGGCCCCAAAACACGTTAGTAGCCAA
* * * * *
14084 CACGATTTTGGCTAAAATTTTGCAAAAAATGACCCGAAA-AAATTTTCCTTAATTTTTGGATAAA
1 CACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATA-TTTCCTCAATTTTTGGCTAAA
* * * * * *
14148 ATACTCATAAAATATATATAATTTAACGGCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATC
65 ATACTCTTAAAAAATATATAA-TTAACGCCAAAAAAATT-GAGGGCTTTTGACGCTTTTAATATC
* *
14213 GTTTTTCATA-TTTTCAGAATTAATTTATAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAA
128 GTTTTTCATATTTTTCAGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
*
14277 CAAATTCTTAAATCCAATGTGGCTAAGATTTGATTAGATGAATATAG----TCAAGGAGTCTTGA
193 CAAATTCTTAAATCCAATGTGGCTAAGATTTGATTAGATGAATATAGATATTCAAGGAGTCTAGA
** * ** *
14338 CACCAAAAATCATGGAAAAAAAAAAGCCGGGGCCCCGGAACACTTTTTTATCCAAAAA
258 CACCAAAAATCATGGAAAAAAAAAAGCCGGGGCCCCAAAACACGTTAGTAGCC---AA
* *
14396 CTATGATGGTTATTACATGATTTCGGCTAAAATTTTGTAAAAATTGAGCCGAAAGATATTTCCTC
1 C-------------AC--GATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTC
14461 AATTTTTGGCTAAAATACTCATT-AAAAATATATAAATTAACGCCAAAAAAATTGAAGGGCTTTT
51 AATTTTTGGCTAAAATACTC-TTAAAAAATATAT-AATTAACGCCAAAAAAATTG-AGGGCTTTT
*
14525 GACG-TTTCTAATATCGTTTTTCCTACTTTTTCCA-AATTAATTTCTAATTAAATCGAAACAAGA
113 GACGCTTT-TAATATCGTTTTTCATA-TTTTT-CAGAATTAATTTCTAATTAAATCGAAACAAGA
* * ** * *
14588 TTCAGATGCCCGTAAAAACAAATCCTTAAATTTAATGTGGATGAGATTTGATTAGATGAATATAG
175 TTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTAAGATTTGATTAGATGAATATAG
14653 ATAT
240 ATAT
14657 GTAGTCTCGG
Statistics
Matches: 474, Mismatches: 62, Indels: 54
0.80 0.11 0.09
Matches are distributed among these distances:
305 1 0.00
306 21 0.04
307 1 0.00
308 23 0.05
311 95 0.20
312 4 0.01
313 112 0.24
314 6 0.01
325 2 0.00
326 4 0.01
327 108 0.23
328 5 0.01
329 90 0.19
330 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (312 bp):
CACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAA
TACTCTTAAAAAATATATAATTAACGCCAAAAAAATTGAGGGCTTTTGACGCTTTTAATATCGTT
TTTCATATTTTTCAGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
ATTCTTAAATCCAATGTGGCTAAGATTTGATTAGATGAATATAGATATTCAAGGAGTCTAGACAC
CAAAAATCATGGAAAAAAAAAAGCCGGGGCCCCAAAACACGTTAGTAGCCAA
Found at i:14524 original size:640 final size:625
Alignment explanation
Indices: 13457--14656 Score: 1516
Period size: 640 Copynumber: 1.9 Consensus size: 625
13447 AAGTGATATT
* * *
13457 ACACGATTTCAGCTAATATTTTGCAAAAAATGACCCGAAATATTTTTCCTTAATTTTTAGAAATA
1 ACACGATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAAATTTTCCTTAATTTTTAGAAATA
* *
13522 ATACTCATAAAAATTATATAATTCAACACCAAAAATATTGAAGGGCTTTTCACGCTTCTAATACC
66 ATACTCATAAAAATTATATAATTCAACACCAAAAAGATTGAAGGACTTTTCACGCTTCTAATACC
* * *
13587 GTTTTTCATTTTTTCCCAAATTAATTTCTAATTTAAACGAAACATGATTCAAATGCTTGTAAAAA
131 GTTTTTCATATTTT-CCAAATTAATTTATAATTTAAACGAAACAAGATTCAAATGCTTGTAAAAA
** * * * * * **
13652 AAACGGCTGGGATTTGGTTAGATGAATATAGATATTTCAAGCAATCATGGCGCCAAAAACATTCA
195 AAACGGCTGAAATTTGGTAAGATGAATAGAGATATGTCAAGCAATCATGACACCAAAAACATGAA
*** * * *
13717 AAACTGAACCGGACCCCGGAACGCGTTTTCAGCCAAAAACCGTGATGATTATTGCACGATTTCAG
260 AAAAAAAACCGGACCCCGGAACACGTTTTCAGCCAAAAACCATGATGATTATTACACGATTTCAG
* *
13782 CTAAAATTTTGCAAAAATTTACCCGAAAGATATTTCCTCAATTTTTAGCCATAATACTCTTAAAA
325 CTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAAAATACTCTTAAAA
* * *
13847 AATATATAATTAATCGCCAAAAATATTGATGGGCTTTTGACGCTTT-TAATATCGTTTTTCATAT
390 AATATATAATTAATCGCCAAAAAAATTGAAGGGCTTTTGACG-TTTCTAATATCGTTTTTCATAC
** * * *
13911 TTTTTCTGAATTAATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTA
454 TTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCTTA
* *
13976 AATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTTAAGGAGTGTCAGCGCCAAAAA
519 AATGCAATGTGGATAAGATTTGATTAGATGAATATAGATATTTTAAGGAGTGTCAGCGCCAAAAA
14041 TCATGCAAAACTTAGCTGGTGCCTCAAAACGCGTTAGTAGCC
584 TCATGCAAAACTTAGCTGGTGCCTCAAAACGCGTTAGTAGCC
** *
14083 ACACGATTTTGGCTAAAATTTTGCAAAAAATGACCCGAAAAAATTTTCCTTAATTTTTGGATAA-
1 ACACGATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAAATTTTCCTTAATTTTTAGA-AAT
* ** * *
14147 AATACTCAT-AAAATATATATAATTTAACGGCAAAAAGATTGGAGGACTTTTCACGCTTTTAATA
65 AATACTCATAAAAAT-TATATAATTCAACACCAAAAAGATTGAAGGACTTTTCACGCTTCTAATA
* *
14211 TCGTTTTTCATATTTT-CAGAATTAATTTATAA-TTAAATCGAAACAAGATTCAGATGCTTGTAA
129 CCGTTTTTCATATTTTCCA-AATTAATTTATAATTTAAA-CGAAACAAGATTCAAATGCTTGTAA
** * * * * *
14274 AAACAAA-TTCTTAAATCCAATGTGGCTAAGATTTGATTAGATGAATATAGTCAAGGAGTCTTGA
192 AAA-AAACGGCTGAAAT----T-TGG-TAAGA--TGAATAGA-G-ATAT-GTCAAGCAATCATGA
* * * * *
14338 CACCAAAAATCATGGAAAAAAAAAAGCCGGGGCCCCGGAACACTTTTTTATCCAAAAACTATGAT
245 CACCAAAAA-CAT-GAAAAAAAAAA-CC-GGACCCCGGAACACGTTTTCAGCCAAAAACCATGAT
* * * * *
14403 GGTTATTACATGATTTCGGCTAAAATTTTGTAAAAATTGAGCCGAAAGATATTTCCTCAATTTTT
306 GATTATTACACGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTT
* *
14468 GGCTAAAATACTCATT-AAAAATATATAAATTAA-CGCCAAAAAAATTGAAGGGCTTTTGACGTT
371 AGCCAAAATACTC-TTAAAAAATATAT-AATTAATCGCCAAAAAAATTGAAGGGCTTTTGACGTT
*
14531 TCTAATATCGTTTTTCCTACTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
434 TCTAATATCGTTTTTCATACTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
** *
14596 CCCGTAAAAACAAATCCTTAAATTTAATGTGGATGAGATTTGATTAGATGAATATAGATAT
499 CCCGTAAAAACAAATCCTTAAATGCAATGTGGATAAGATTTGATTAGATGAATATAGATAT
14657 GTAGTCTCGG
Statistics
Matches: 483, Mismatches: 68, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
624 7 0.01
625 47 0.10
626 123 0.25
627 2 0.00
629 1 0.00
630 3 0.01
631 4 0.01
633 6 0.01
634 1 0.00
635 4 0.01
636 18 0.04
637 3 0.01
638 6 0.01
639 5 0.01
640 245 0.51
641 8 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (625 bp):
ACACGATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAAATTTTCCTTAATTTTTAGAAATA
ATACTCATAAAAATTATATAATTCAACACCAAAAAGATTGAAGGACTTTTCACGCTTCTAATACC
GTTTTTCATATTTTCCAAATTAATTTATAATTTAAACGAAACAAGATTCAAATGCTTGTAAAAAA
AACGGCTGAAATTTGGTAAGATGAATAGAGATATGTCAAGCAATCATGACACCAAAAACATGAAA
AAAAAAACCGGACCCCGGAACACGTTTTCAGCCAAAAACCATGATGATTATTACACGATTTCAGC
TAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAAAATACTCTTAAAAA
ATATATAATTAATCGCCAAAAAAATTGAAGGGCTTTTGACGTTTCTAATATCGTTTTTCATACTT
TTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCTTAAA
TGCAATGTGGATAAGATTTGATTAGATGAATATAGATATTTTAAGGAGTGTCAGCGCCAAAAATC
ATGCAAAACTTAGCTGGTGCCTCAAAACGCGTTAGTAGCC
Found at i:15380 original size:17 final size:15
Alignment explanation
Indices: 15330--15381 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
15320 GTTTCATGAA
* *
15330 TATAAATAATAATAT
1 TATAATTAAAAATAT
*
15345 TATAATTAAATATAT
1 TATAATTAAAAATAT
15360 TATAATCTAAAAATAAT
1 TATAAT-TAAAAAT-AT
15377 TATAA
1 TATAA
15382 GAAGTAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 18 0.58
16 6 0.19
17 7 0.23
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
TATAATTAAAAATAT
Found at i:18535 original size:10 final size:10
Alignment explanation
Indices: 18520--18549 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
18510 TTTTTTCTCA
18520 CCATTTTCTT
1 CCATTTTCTT
18530 CCATTTTCTT
1 CCATTTTCTT
*
18540 TCATTTTCTT
1 CCATTTTCTT
18550 GACTCTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.27, G:0.00, T:0.63
Consensus pattern (10 bp):
CCATTTTCTT
Found at i:31782 original size:31 final size:31
Alignment explanation
Indices: 31746--31913 Score: 159
Period size: 31 Copynumber: 5.5 Consensus size: 31
31736 AAAGGCTAAT
*
31746 TGCTCAAATAAGGGCCTAATGTTTGTCAAAA
1 TGCTCAAATAAGGGCCTAATCTTTGTCAAAA
** **
31777 TGCTCAAATAAGGGCCCGATCTTT-T-AATT
1 TGCTCAAATAAGGGCCTAATCTTTGTCAAAA
* * * *
31806 TGGTCAAATAAGGACCTAATATTTGCCAAAA
1 TGCTCAAATAAGGGCCTAATCTTTGTCAAAA
* **
31837 TGCTCAAATAAGGGCCTGATCTTT-T-AATT
1 TGCTCAAATAAGGGCCTAATCTTTGTCAAAA
*
31866 TAGC-CAAATAAGGGCCTAA-CGTTTGCCAAAA
1 T-GCTCAAATAAGGGCCTAATC-TTTGTCAAAA
31897 TGCTCAAATAAGGGCCT
1 TGCTCAAATAAGGGCCT
31914 GACATCGAAA
Statistics
Matches: 106, Mismatches: 24, Indels: 14
0.74 0.17 0.10
Matches are distributed among these distances:
28 1 0.01
29 41 0.39
30 5 0.05
31 59 0.56
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (31 bp):
TGCTCAAATAAGGGCCTAATCTTTGTCAAAA
Found at i:31913 original size:60 final size:60
Alignment explanation
Indices: 31750--31915 Score: 269
Period size: 60 Copynumber: 2.8 Consensus size: 60
31740 GCTAATTGCT
* * * *
31750 CAAATAAGGGCCTAATGTTTGTCAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGT
1 CAAATAAGGGCCTAATGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTAGC
* *
31810 CAAATAAGGACCTAATATTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTAGC
1 CAAATAAGGGCCTAATGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTAGC
*
31870 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCCTGA
1 CAAATAAGGGCCTAATGTTTGCCAAAATGCTCAAATAAGGGCCTGA
31916 CATCGAAAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 97 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (60 bp):
CAAATAAGGGCCTAATGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTAGC
Found at i:31989 original size:31 final size:30
Alignment explanation
Indices: 31954--32118 Score: 131
Period size: 31 Copynumber: 5.5 Consensus size: 30
31944 CTGATGCAGA
*
31954 CCCTTATTTGAGCATTTTGGCAAACATTAGG
1 CCCTTATTTGAGCATTTT-GAAAACATTAGG
** * ***
31985 CCCTTATTTG-GCCAAATT-AAAAGACCGGG
1 CCCTTATTTGAG-CATTTTGAAAACATTAGG
* *
32014 CCCTTATTTGAGCATTTTGGCAAACGTTAGG
1 CCCTTATTTGAGCATTTT-GAAAACATTAGG
** * *
32045 CCCTTATTTG-GCCAAATT-AAAAGATTGGG
1 CCCTTATTTGAG-CATTTTGAAAACATTAGG
*
32074 CCCTTATTTGAGCATTTTGAAAAACGTTAGG
1 CCCTTATTTGAGCATTTTG-AAAACATTAGG
32105 CCCTTATTTGAGCA
1 CCCTTATTTGAGCA
32119 ATTAGTCAAA
Statistics
Matches: 100, Mismatches: 26, Indels: 16
0.70 0.18 0.11
Matches are distributed among these distances:
29 41 0.41
30 4 0.04
31 55 0.55
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (30 bp):
CCCTTATTTGAGCATTTTGAAAACATTAGG
Found at i:32021 original size:29 final size:28
Alignment explanation
Indices: 31983--32083 Score: 80
Period size: 29 Copynumber: 3.4 Consensus size: 28
31973 GCAAACATTA
31983 GGCCCTTATTTGGCCAAATTAAAAGACCG
1 GGCCCTTATTTGGCCAAATTAAAAGA-CG
** **
32012 GGCCCTTATTTGAG-CATTTTGGCAA-ACG
1 GGCCCTTATTTG-GCCAAATT-AAAAGACG
*
32040 TTAGGCCCTTATTTGGCCAAATTAAAAGATTG
1 ---GGCCCTTATTTGGCCAAATTAAAAGA-CG
32072 GGCCCTTATTTG
1 GGCCCTTATTTG
32084 AGCATTTTGA
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
28 2 0.04
29 29 0.53
30 6 0.11
31 17 0.31
32 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (28 bp):
GGCCCTTATTTGGCCAAATTAAAAGACG
Found at i:32029 original size:60 final size:60
Alignment explanation
Indices: 31954--32114 Score: 277
Period size: 60 Copynumber: 2.7 Consensus size: 60
31944 CTGATGCAGA
*
31954 CCCTTATTTGAGCATTTTGGCAAACATTAGGCCCTTATTTGGCCAAATTAAAAGACCGGG
1 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGACCGGG
**
32014 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATTGGG
1 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGACCGGG
**
32074 CCCTTATTTGAGCATTTTGAAAAACGTTAGGCCCTTATTTG
1 CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTG
32115 AGCAATTAGT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 96 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (60 bp):
CCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGACCGGG
Found at i:54107 original size:19 final size:20
Alignment explanation
Indices: 54069--54112 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
54059 GGATCCTCTC
*
54069 TCTTCAGATGTTGATGAGTT
1 TCTTCAGAAGTTGATGAGTT
*
54089 TCTTCAGAAGTT-TTGAGTT
1 TCTTCAGAAGTTGATGAGTT
54108 TCTTC
1 TCTTC
54113 CCATTTCCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.48
Consensus pattern (20 bp):
TCTTCAGAAGTTGATGAGTT
Found at i:54703 original size:39 final size:39
Alignment explanation
Indices: 54660--55140 Score: 658
Period size: 39 Copynumber: 12.3 Consensus size: 39
54650 TTCTCTTTCC
54660 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
54699 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
*
54738 TCTCATTTTCTTCTCGTTCGCGAGCTTCCTTCAATCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* *
54777 TCTCATGTTCTTCTCGTTCGCGAGCTTCCTTCAATCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* *
54816 TCTCATTTTCTTCTCGTTCACGGGCTTCCCTCAATCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* * * *
54855 TCTCATTTTCTTCTTGCTCACGGGCTTCCTTCAGTCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* * *
54894 TCTCATTTTCTTCTCGTTCACGGGCTTCCCTCAGTCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* * *
54933 TCTC-TTTCTCTTCTCGTTCACGCGCTTCCCTCAATCTCC
1 TCTCATTT-TCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* * * *
54972 TCTCCTTCTCTTCTCGTTCACGAGCTTCCCTCAATCTCC
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* * * *
55011 TCTCCTTCTCTTCTCGTTCACGAGCTTCCCTCAATCTCC
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* * * *
55050 TCTCTTTTTCTTCTCGTTCATGAGCTTCCTTCAAACTCC
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
* ** *
55089 TCTCTTTTTCTTCTCGTTCGTGGGCTTCCTTCAATCTCT
1 TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
*
55128 TCTCCTTTTCTTC
1 TCTCATTTTCTTC
55141 CTGCTCAAGG
Statistics
Matches: 412, Mismatches: 28, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
38 3 0.01
39 407 0.99
40 2 0.00
ACGTcount: A:0.10, C:0.36, G:0.10, T:0.45
Consensus pattern (39 bp):
TCTCATTTTCTTCTCGTTCACGAGCTTCCTTCAATCTCT
Found at i:62712 original size:78 final size:78
Alignment explanation
Indices: 62578--62738 Score: 286
Period size: 78 Copynumber: 2.1 Consensus size: 78
62568 GTTTTCTACT
* *
62578 TAAAATAGTAAAATGGTAAACTGAAATAGTTATAAAGATATTAGATTTAATCAAATAAAAATAGA
1 TAAAATAGTAAAATGGTAAAATAAAATAGTTATAAAGATATTAGATTTAATCAAATAAAAATAGA
62643 GTTTTTAGTTGAG
66 GTTTTTAGTTGAG
* *
62656 TAAAATAGTAAAATGGTAAAATAAAATAGTTCTAAAGATATTAGATTTAATTAAATAAAAATAGA
1 TAAAATAGTAAAATGGTAAAATAAAATAGTTATAAAGATATTAGATTTAATCAAATAAAAATAGA
62721 GTTTTTAGTTGAG
66 GTTTTTAGTTGAG
62734 TAAAA
1 TAAAA
62739 CTATAAATCT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (78 bp):
TAAAATAGTAAAATGGTAAAATAAAATAGTTATAAAGATATTAGATTTAATCAAATAAAAATAGA
GTTTTTAGTTGAG
Found at i:64342 original size:22 final size:22
Alignment explanation
Indices: 64314--64358 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
64304 TCAGTTTCTT
64314 AACAATGGGAGTTAATGTATTG
1 AACAATGGGAGTTAATGTATTG
64336 AACAATGGGAGTTAATGTATTG
1 AACAATGGGAGTTAATGTATTG
64358 A
1 A
64359 CTTTTGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (22 bp):
AACAATGGGAGTTAATGTATTG
Found at i:71103 original size:5 final size:5
Alignment explanation
Indices: 71093--71146 Score: 65
Period size: 5 Copynumber: 10.6 Consensus size: 5
71083 TGCACCTTTT
* *
71093 ATTTA ATTTA ATTTA ATTTA ATTTA GTTTA ATAATTA ATTTA A-TTA ATTCA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT--TTA ATTTA ATTTA ATTTA
71144 ATT
1 ATT
71147 ATGAACAGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
4 4 0.09
5 34 0.79
7 5 0.12
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (5 bp):
ATTTA
Found at i:75708 original size:16 final size:18
Alignment explanation
Indices: 75687--75723 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
75677 TCTTTATTTC
75687 TTTTTT-TTTTCTTCTTT
1 TTTTTTCTTTTCTTCTTT
75704 TTTTTTCCTTTTCTTCTTT
1 TTTTTT-CTTTTCTTCTTT
75723 T
1 T
75724 GGGCCAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTCTTTTCTTCTTT
Found at i:75709 original size:19 final size:19
Alignment explanation
Indices: 75674--75723 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
75664 AAAATTCTTA
**
75674 TTTTCTT-TATTTCTTTTTT
1 TTTTCTTCT-TTTCTTTTCC
*
75693 TTTTCTTCTTTTTTTTTCC
1 TTTTCTTCTTTTCTTTTCC
75712 TTTTCTTCTTTT
1 TTTTCTTCTTTT
75724 GGGCCAGGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTCTTCTTTTCTTTTCC
Found at i:77041 original size:21 final size:21
Alignment explanation
Indices: 77017--77092 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
77007 TATTTTTATG
*
77017 AAATTTTGATAATTACCTATT
1 AAATTTTGATAATTACCTATA
** *
77038 AAATTTTGATAACCACCATATG
1 AAATTTTGATAATTACC-TATA
77060 AAATTTTGATAATTACCTATA
1 AAATTTTGATAATTACCTATA
*
77081 AAATTGTGATAA
1 AAATTTTGATAA
77093 ACTCCATAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 29 0.62
22 18 0.38
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (21 bp):
AAATTTTGATAATTACCTATA
Found at i:77066 original size:22 final size:21
Alignment explanation
Indices: 77013--77136 Score: 95
Period size: 22 Copynumber: 5.8 Consensus size: 21
77003 TGAATATTTT
**
77013 TATGAAATTTTGATAATTACC
1 TATGAAATTTTGATAACCACC
*
77034 TATTAAATTTTGATAACCACC
1 TATGAAATTTTGATAACCACC
**
77055 ATATGAAATTTTGATAATTACC
1 -TATGAAATTTTGATAACCACC
* * * *
77077 TATAAAATTGTGATAAACTCC
1 TATGAAATTTTGATAACCACC
* * *
77098 ATAAGAAACTTTGATAACCTAAC
1 -TATGAAATTTTGATAACC-ACC
* *
77121 TATAAAATTTTAATAA
1 TATGAAATTTTGATAA
77137 ATTTTCCTAT
Statistics
Matches: 78, Mismatches: 22, Indels: 5
0.74 0.21 0.05
Matches are distributed among these distances:
21 34 0.44
22 43 0.55
23 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (21 bp):
TATGAAATTTTGATAACCACC
Found at i:77074 original size:43 final size:43
Alignment explanation
Indices: 77013--77129 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
77003 TGAATATTTT
* * *
77013 TATGAAATTTTGATAATTACCTATTAAATTTTGATAACCACCA
1 TATGAAATTTTGATAATTACCTATAAAATTGTGATAAACACCA
*
77056 TATGAAATTTTGATAATTACCTATAAAATTGTGATAAACTCCA
1 TATGAAATTTTGATAATTACCTATAAAATTGTGATAAACACCA
* * * *
77099 TAAGAAACTTTGATAACCTAACTATAAAATT
1 TATGAAATTTTGATAA-TTACCTATAAAATT
77130 TTAATAAATT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 53 0.82
44 12 0.18
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.37
Consensus pattern (43 bp):
TATGAAATTTTGATAATTACCTATAAAATTGTGATAAACACCA
Found at i:77165 original size:20 final size:21
Alignment explanation
Indices: 77013--77182 Score: 71
Period size: 22 Copynumber: 7.9 Consensus size: 21
77003 TGAATATTTT
*
77013 TATGAAATTTTGATAAT-TACC
1 TATG-AATTTTGATAATCTTCC
* **
77034 TATTAAATTTTGATAA-CCACC
1 TA-TGAATTTTGATAATCTTCC
*
77055 ATATGAAATTTTGATAAT-TACC
1 -TATG-AATTTTGATAATCTTCC
* * *
77077 TATAAAATTGTGATAAAC-TCC
1 TAT-GAATTTTGATAATCTTCC
* * * **
77098 ATAAGAAACTTTGATAACCTAAC
1 -TATG-AATTTTGATAATCTTCC
* * *
77121 TATAAAATTTTAATAAATTTTCC
1 TAT-GAATTTTGAT-AATCTTCC
77144 TATGAATTTTG-TAATCTTCC
1 TATGAATTTTGATAATCTTCC
*
77164 TATGATTTTTGATAATCTT
1 TATGAATTTTGATAATCTT
77183 TGTGTGAGAT
Statistics
Matches: 109, Mismatches: 27, Indels: 26
0.67 0.17 0.16
Matches are distributed among these distances:
20 17 0.16
21 40 0.37
22 44 0.40
23 8 0.07
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (21 bp):
TATGAATTTTGATAATCTTCC
Found at i:77181 original size:21 final size:20
Alignment explanation
Indices: 77140--77182 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
77130 TTAATAAATT
77140 TTCCTATGAATTTTGTAATC
1 TTCCTATGAATTTTGTAATC
*
77160 TTCCTATGATTTTTGATAATC
1 TTCCTATGAATTTTG-TAATC
77181 TT
1 TT
77183 TGTGTGAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (20 bp):
TTCCTATGAATTTTGTAATC
Found at i:89246 original size:22 final size:23
Alignment explanation
Indices: 89220--89268 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 23
89210 AATTTTAAAG
89220 TTTGG-AAATTTAATTGCTTGTT
1 TTTGGCAAATTTAATTGCTTGTT
89242 TTTGGCACCAAATTTAATTGCTTGTT
1 TTTGG---CAAATTTAATTGCTTGTT
89268 T
1 T
89269 AAATAGTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
26 18 0.78
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.51
Consensus pattern (23 bp):
TTTGGCAAATTTAATTGCTTGTT
Found at i:92875 original size:42 final size:42
Alignment explanation
Indices: 92816--92896 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
92806 GCTAAGTCTT
92816 GAAAATTCTCTGTAAATTAAGAAATACTCAACTCAAATCATA
1 GAAAATTCTCTGTAAATTAAGAAATACTCAACTCAAATCATA
* *
92858 GAAAATTCTTTGTAAATTAAGAAATACTGAACTCAAATC
1 GAAAATTCTCTGTAAATTAAGAAATACTCAACTCAAATC
92897 CTGATCCTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.30
Consensus pattern (42 bp):
GAAAATTCTCTGTAAATTAAGAAATACTCAACTCAAATCATA
Found at i:93069 original size:56 final size:58
Alignment explanation
Indices: 92966--93081 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 58
92956 ATTTTGTAGA
*
92966 ATAATTAAGTAGAGATAGGGGGATAAGATTGATTATACTAACATTTATTGTGTGAAAGG
1 ATAATTAAGTAGAGACAGGGGGATAAGATT-ATTATACTAACATTTATTGTGTGAAAGG
* * *
93025 ATAATTAAGTAGAGACATGGGGATATGATT-TTTTA-TAACATTTATTGTGTGAAAGG
1 ATAATTAAGTAGAGACAGGGGGATAAGATTATTATACTAACATTTATTGTGTGAAAGG
93081 A
1 A
93082 AACGGATAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
56 22 0.42
57 4 0.08
59 27 0.51
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.34
Consensus pattern (58 bp):
ATAATTAAGTAGAGACAGGGGGATAAGATTATTATACTAACATTTATTGTGTGAAAGG
Found at i:93948 original size:11 final size:13
Alignment explanation
Indices: 93922--93953 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
93912 AAAAAAGGGG
93922 CTCTGTTCTGTTT
1 CTCTGTTCTGTTT
93935 CTCTGTT-T-TTT
1 CTCTGTTCTGTTT
93946 CTCTGTTC
1 CTCTGTTC
93954 CAATTGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.56
12 1 0.06
13 7 0.39
ACGTcount: A:0.00, C:0.25, G:0.12, T:0.62
Consensus pattern (13 bp):
CTCTGTTCTGTTT
Found at i:108110 original size:52 final size:52
Alignment explanation
Indices: 108041--108146 Score: 160
Period size: 52 Copynumber: 2.0 Consensus size: 52
108031 CATTCATTTT
* **
108041 CTCCTAAACCATTGGGTATTAAAAATTTCAA-TCTGTTTAATTGATTTTAATA
1 CTCCTAAACCATTGGGTATTAAAAACTTCAACT-TGTTTAATCAATTTTAATA
*
108093 CTCCTAAACCATTGGGTATTAAGAACTTCAACTTGTTTAATCAATTTTAATA
1 CTCCTAAACCATTGGGTATTAAAAACTTCAACTTGTTTAATCAATTTTAATA
108145 CT
1 CT
108147 TGTTGGGATG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
52 48 0.98
53 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (52 bp):
CTCCTAAACCATTGGGTATTAAAAACTTCAACTTGTTTAATCAATTTTAATA
Found at i:115598 original size:41 final size:41
Alignment explanation
Indices: 115536--115616 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
115526 CAACATGCTT
* * *
115536 AGTTCTTTTCAATTAAGGACAAGATTCTACATTTCACATTC
1 AGTTCTCTTCAATCAAGGACAAGATTCCACATTTCACATTC
* *
115577 AGTTCTCTTCAATC-AGAGACAATATTCCACATTTGACATT
1 AGTTCTCTTCAATCAAG-GACAAGATTCCACATTTCACATT
115617 GCACGTCCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (41 bp):
AGTTCTCTTCAATCAAGGACAAGATTCCACATTTCACATTC
Found at i:133910 original size:22 final size:22
Alignment explanation
Indices: 133878--133943 Score: 91
Period size: 22 Copynumber: 3.0 Consensus size: 22
133868 CGAAATGCTA
*
133878 ATTTA-TGAGTCGAACTCGAGT
1 ATTTATTGAGTCGAACCCGAGT
133899 ATTTATTGAGTCG-ACCCTGAGT
1 ATTTATTGAGTCGAACCC-GAGT
*
133921 ATTTATTGAGTCGACCCCGAGT
1 ATTTATTGAGTCGAACCCGAGT
133943 A
1 A
133944 GCTCATGAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.20
22 29 0.73
23 3 0.08
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (22 bp):
ATTTATTGAGTCGAACCCGAGT
Found at i:134071 original size:15 final size:16
Alignment explanation
Indices: 134042--134079 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
134032 GCAGTGGAGT
134042 GAGAA-AAAATGAAGG
1 GAGAAGAAAATGAAGG
134057 GAGAAGAAAAT-AAGG
1 GAGAAGAAAATGAAGG
*
134072 AAGAAGAA
1 GAGAAGAA
134080 GAAGTAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.05
Consensus pattern (16 bp):
GAGAAGAAAATGAAGG
Found at i:134939 original size:13 final size:13
Alignment explanation
Indices: 134916--134949 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
134906 TATTTAGCAC
134916 ATAAT-ATATAAT
1 ATAATAATATAAT
134928 ATAATAATATAAT
1 ATAATAATATAAT
134941 ATAATAATA
1 ATAATAATA
134950 CTAGTAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:136678 original size:2 final size:2
Alignment explanation
Indices: 136673--136697 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
136663 CTATAAATTC
136673 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
136698 AATTAAACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.