Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017847.1 Corchorus olitorius cultivar O-4 contig17880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111694

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5363--5526
60
2.7
58
77
10
177
37
15
16
31
1.90
5568--5728
31
5.3
31
66
11
109
29
16
16
37
1.91
5568--5727
60
2.7
60
91
0
248
29
16
16
37
1.91
8171--8246
37
2.1
37
90
2
118
44
5
19
30
1.73
23736--23788
24
2.2
24
86
6
72
77
7
7
7
1.13
32393--32422
13
2.2
14
94
5
53
0
36
0
63
0.95
37597--37621
13
1.9
13
100
0
50
16
32
4
48
1.64
59882--59928
22
2.1
22
100
0
94
21
12
23
42
1.87
65008--65048
21
2.0
21
85
9
57
56
4
14
24
1.58
68049--68076
1
28.0
1
100
0
56
100
0
0
0
0.00
78345--78370
1
26.0
1
100
0
52
100
0
0
0
0.00
78862--78905
20
2.2
20
83
0
52
20
6
6
65
1.39
78879--78941
21
3.0
21
69
4
65
25
6
7
60
1.48
78879--78941
20
3.1
20
71
13
65
25
6
7
60
1.48
79196--79255
3
20.3
3
96
3
113
33
0
0
66
0.92
83075--83113
3
13.0
3
94
0
69
64
0
35
0
0.94
83516--83597
39
2.1
38
90
2
128
34
9
8
47
1.67
86275--86300
13
2.0
13
100
0
52
38
7
15
38
1.76
88267--88323
21
2.9
19
80
10
69
35
19
8
36
1.83
97189--97222
10
3.2
10
91
8
50
0
17
0
82
0.67
98332--98389
19
2.9
20
87
5
82
36
12
20
31
1.89
98332--98390
21
3.0
20
87
5
84
35
11
20
32
1.89

Tables:   1

The End!