Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017851.1 Corchorus olitorius cultivar O-4 contig17884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51158

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4642--4709
27
2.5
26
75
15
75
14
1
54
29
1.49
8245--8297
27
1.9
28
88
3
81
49
15
5
30
1.67
11493--11688
98
2.0
97
96
1
365
40
19
11
28
1.87
14756--14806
21
2.4
21
80
0
57
13
41
1
43
1.55
16729--16776
15
3.2
15
81
0
60
14
43
6
35
1.71
17107--17144
15
2.5
15
91
0
58
10
47
0
42
1.38
21924--21954
15
2.1
15
93
0
53
29
22
6
41
1.78
22276--22300
7
3.6
7
100
0
50
48
12
0
40
1.40
23533--23599
33
2.0
33
94
0
116
22
16
2
58
1.52
26440--26484
3
15.0
3
100
0
90
33
0
0
66
0.92
45908--45964
29
2.0
28
89
6
87
31
19
7
42
1.78
47016--47117
53
1.9
54
91
2
170
38
18
9
33
1.84

Tables:   1

The End!