Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017852.1 Corchorus olitorius cultivar O-4 contig17885, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5201
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28


Found at i:1823 original size:14 final size:14

Alignment explanation


    Indices: 1804--1833  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1794 TCCCCAAAGA

                          
       1804 TTGATTCCCTTTCT
          1 TTGATTCCCTTTCT

                          
       1818 TTGATTCCCTTTCT
          1 TTGATTCCCTTTCT

              
       1832 TT
          1 TT

       1834 ATCTACCACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.07, C:0.27, G:0.07, T:0.60


Consensus pattern (14 bp):   
TTGATTCCCTTTCT
Done.