Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017853.1 Corchorus olitorius cultivar O-4 contig17886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85404

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6090--6153
21
3.2
21
65
13
62
14
42
12
31
1.82
6077--6154
39
2.0
39
97
0
147
14
38
12
34
1.84
24777--24894
60
2.0
60
96
0
218
46
22
8
22
1.78
25069--25294
24
9.2
25
67
22
104
0
37
11
50
1.42
25122--25374
48
5.2
48
82
9
250
0
38
9
50
1.39
25056--25374
96
3.3
96
79
14
275
0
38
10
50
1.40
25197--25373
24
7.2
24
68
14
121
0
38
9
50
1.39
25334--25477
30
5.3
30
69
20
104
0
47
6
45
1.33
25303--25483
24
7.0
26
72
13
99
0
45
6
47
1.33
25369--25553
48
3.8
48
81
6
158
1
46
6
45
1.36
25367--25531
72
2.2
73
88
3
233
0
46
6
46
1.33
25399--25568
72
2.4
72
85
0
214
0
44
7
47
1.36
25399--25568
24
7.1
24
84
0
178
0
44
7
47
1.36
31655--31705
17
3.1
16
83
10
66
19
21
21
37
1.95
32900--32937
11
3.5
11
89
10
51
39
0
2
57
1.12
45034--45061
6
4.7
6
100
0
56
28
0
17
53
1.44
51173--51199
13
2.1
13
100
0
54
44
0
7
48
1.31
51506--51574
34
2.0
35
82
5
86
68
1
13
17
1.29
52142--52176
11
3.2
11
83
0
52
77
17
5
0
0.96
52461--52520
29
2.0
30
90
6
95
48
20
3
28
1.65
59275--59354
12
6.8
12
82
12
103
12
0
22
65
1.26
59278--59363
24
3.6
24
90
6
106
12
0
22
65
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59275--59354
36
2.2
36
97
2
153
12
0
22
65
1.26
59325--59382
24
2.4
24
82
0
62
15
0
24
60
1.35
64286--64311
13
2.0
13
100
0
52
61
15
15
7
1.55
70164--70205
20
2.1
20
95
0
75
30
21
21
26
1.98
70071--70243
58
3.0
55
83
7
238
34
19
24
21
1.97
70189--70300
38
2.9
38
100
0
224
34
18
25
21
1.96
73527--73555
3
9.7
3
100
0
58
0
31
0
68
0.89
78622--78665
23
1.9
23
85
0
61
70
2
6
20
1.21
79012--79193
91
2.0
91
98
0
355
29
1
27
41
1.66
84835--85382
28
19.6
28
74
7
364
16
28
27
27
1.97
84949--85385
83
5.2
83
74
7
303
17
27
26
28
1.98

Tables:   1

The End!