Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017854.1 Corchorus olitorius cultivar O-4 contig17887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3815
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29


Found at i:559 original size:57 final size:58

Alignment explanation


    Indices: 498--607  Score: 141
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        488 GGATGCTCGT

                   *    *                 * **   *                    
        498 TTTTCTTTTTGCGCAAGT-GGGGATGCCCATTGGGTCGTGTGACCGAGGGATGTTTGA
          1 TTTTCTTATTGCACAAGTGGGGGATGCCCACTAAGTCATGTGACCGAGGGATGTTTGA

                         **                                      
        555 TTTTCTTATTGCATGAGTGGGGGATGCCCACTAAGTCATGTGACCGAGGGATG
          1 TTTTCTTATTGCACAAGTGGGGGATGCCCACTAAGTCATGTGACCGAGGGATG

        608 CTCGGTCGTT


Statistics
Matches: 44,  Mismatches: 8, Indels: 1
        0.83            0.15        0.02

Matches are distributed among these distances:
  57   14  0.32
  58   30  0.68

ACGTcount: A:0.17, C:0.16, G:0.34, T:0.33


Consensus pattern (58 bp):   
TTTTCTTATTGCACAAGTGGGGGATGCCCACTAAGTCATGTGACCGAGGGATGTTTGA
Done.