Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017861.1 Corchorus olitorius cultivar O-4 contig17894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24741
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34


Found at i:24288 original size:31 final size:31

Alignment explanation


    Indices: 24253--24314  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

      24243 AAGTTGAGTA

                       *                   
      24253 TGCCAAGTATGGTACTGAAGCTCCTTTTGAC
          1 TGCCAAGTATGCTACTGAAGCTCCTTTTGAC

                                           
      24284 TGCCAAGTATGCTACTGAAGCTCCTTTTGAC
          1 TGCCAAGTATGCTACTGAAGCTCCTTTTGAC

      24315 ACAGAACTAG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32


Consensus pattern (31 bp):   
TGCCAAGTATGCTACTGAAGCTCCTTTTGAC
Done.