Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017875.1 Corchorus olitorius cultivar O-4 contig17908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6074
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Found at i:3223 original size:992 final size:996
Alignment explanation
Indices: 1286--3533 Score: 3236
Period size: 992 Copynumber: 2.3 Consensus size: 996
1276 CATACGAGCC
*
1286 AGTAAACGATTTCGGCTAAAATTTTATAAAAGTGGATTCAAAAAAATTTTCCTCAATTTTTGGCC
1 AGTACACGATTTCGGCTAAAATTTTATAAAAGTGGA-TCAAAAAAATTTTCCTCAATTTTTGGCC
*
1351 AGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAAT
65 AGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
* * **
1416 ATCGTTTTTCTTATTTTTTTTTCTGAATTAATTTCTAATTAAAGTGAAATAAGATTGAAAATGCT
130 ATCGTTTTTCTT-TTTTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAAGATTCCAAATGCT
* * * * *
1481 CGTAAAAACAATTCTTTAAATCCAATATGGCTGAGATTTTGTTAGATTAATAAAGATATTTCAAG
194 CGTAAAAACAATTCTTT-AATCCAATGTGGCTAAAATTTTGTTAGACTAATAAAGATATTACAAG
* * * * *
1546 GAGTCTGGGCGGAGAAAATCAAGTAAAACTGACCTGGGGCCCTGAAACGCGTTTTTAGCAAAAAC
258 AAGTCTGGGCGGAAAAAATCAAGCAAAACTGACCTGGGGCACTGAAACGCGTTTTGAGCAAAAAC
* * *** ** * *
1611 CCTAAAGGTTAGTATACGTTTTTGGCTAATCTTTTGCAAAAATTGTCCCGAAAATTTTTTCCACA
323 CCTAAAGCTTAGTACACGTTTACAGCTAAAATTTTGCAAAAATAGTCCCGAAAAGTTTTTCCACA
*
1676 ATTTTTGGACACAATACTCATAAAATGTATAAAATTCGACACCGAAAAGATCGAAGGGCTTTTCA
388 ATTTTTGGACACAATACTCATAAAAGGTATAAAATTCGACACCGAAAAGATCGAAGGGCTTTTCA
* *
1741 TGCTTCTAATTTCGATTTTACTGATTTTTTTTTCCGTATTTATTTCTAATAAAAATGAAACTGAT
453 TGCTTCTAATTTCGATTTCACTGATATTTTTTTCCGTATTTATTTCTAATAAAAATGAAACTGAT
* *
1806 TTCCGAAGCTCGTAAACACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATAG
518 TTCCAAAGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATAG
* * *
1871 ATATTTCAAGGAGTTTGGGCGACAAAAATAAAAAAAACTGGGCCGGGGCCCCGGAATGCGTTTTT
583 ATATTTCAAGGAGTCTGGACGACAAAAATAAAAAAAACTGGACCGGGGCCCCGGAATGCGTTTTT
* * * * *
1936 AGCAAAAACCCTGATGGTTAGTACACGATTTCGGCTAAAATTATGCAAAAATTGACCCGAAAGGT
648 ACCAAAAACCCTGATGGGTAGTACACGATTTCGGCTAAAATTATACAAAAATTGACCCAAAAGAT
* * *
2001 TTTGCCTCAATTTTTAGCCATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGG
713 TTTGCCTCAATTTTTAGCCATAATAGTCGACAAAAATATACGACTCAAGCCAAAAAGATTGAACG
* *
2066 GCTTTTCATGCTTCTAATATAGTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATCAAAA
778 GCCTTTCATGCTTCTAATATAGTTTTTCATATTTATTTCCGAATTAATTTCTAAGAAAATCAAAA
* *
2131 GAAGATTCTGATCCTCGTAAAAACAAATCCTCAAATCGATTGTAGCTAAGATTTCATTACATGAA
843 CAAGATTCCGATCCTCGTAAAAACAAATCCTCAAATCGATTGTAGCTAAGATTTCATTACATGAA
* * *
2196 TATAGATATGCCAAGGGGTCTGCGCGCCAAAAATCAATCAAAACTGAGACTGGG-CCCGGAACGC
908 TATAGATATGCCAAAGAGTCTGCGCGCCAAAAATCAAACAAAACTGAGAC-GGGACCCGGAACGC
2260 GTTTTTAGCAAAAA-AATGACT-G-T
972 GTTTTTAGCAAAAATAATGA-TGGTT
* *
2283 AGTACGCGATTTCGGCTAAAATTTTATAAAAGTGGACTC-AAAAAATTTATCCTCAATTTTTGGA
1 AGTACACGATTTCGGCTAAAATTTTATAAAAGTGGA-TCAAAAAAATTT-TCCTCAATTTTTGGC
* * *
2347 CAGAATACTCGTAAAAAATATATAACTCAACACCAAAAAGATTAAAGGGCTTTTCACACTTCTAA
64 CAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAA
*
2412 TATCATTTTTCTTTTTTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAAGA-TCCAAATGCT
129 TATCGTTTTTCTTTTTTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAAGATTCCAAATGCT
* *
2476 CGT-AAAACAATTCTTTAATCCAATGTGACTAAAATTTTGTTAGACTAATATAGATATTACAAGA
194 CGTAAAAACAATTCTTTAATCCAATGTGGCTAAAATTTTGTTAGACTAATAAAGATATTACAAGA
* * *
2540 AGTCTGGGCGGAAAAAATCAAGCAAAACTGAGCTGGGGCACTGGAACGCGTTTTGAGCAAAAACT
259 AGTCTGGGCGGAAAAAATCAAGCAAAACTGACCTGGGGCACTGAAACGCGTTTTGAGCAAAAACC
* * **
2605 GTGATA-CTTAGTACACGTTTACAGCTAAAATTTTGCAAAAATAGTCCCGAAAAGTTTTTCCTGA
324 CT-AAAGCTTAGTACACGTTTACAGCTAAAATTTTGCAAAAATAGTCCCGAAAAGTTTTTCCACA
* *
2669 ATTTTTGGACACAATACTCATAAAAGGTTTAAAATTCGACACCGAAAATAT-GAAAGGGCTTTTC
388 ATTTTTGGACACAATACTCATAAAAGGTATAAAATTCGACACCGAAAAGATCG-AAGGGCTTTTC
2733 ATGCTTCTAATTTCGATTTCACT-A-ATTTTTTTCCGTATTTATTTCTAATAAAAATGAAACTGA
452 ATGCTTCTAATTTCGATTTCACTGATATTTTTTTCCGTATTTATTTCTAATAAAAATGAAACTGA
* * *
2796 TTTCTAAAGCTCGTAAAAATAAATCCTTAAATCCAATGTGGTTGAGTTTTGGTTAGATGAATATA
517 TTTCCAAAGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATA
* * *
2861 GATATTTCAAGGAGTCTGGACGGCAAAAATCAAGAAAAACTGGATCGGGGCCCCGGAATGCGTTT
582 GATATTTCAAGGAGTCTGGACGACAAAAAT-AAAAAAAACTGGACCGGGGCCCCGGAATGCGTTT
*
2926 TTACCAAAAACCCTGATGGGTAGTACACGATTTCGGCTAAAATTTTACAAAAATTGACCCAAAAG
646 TTACCAAAAACCCTGATGGGTAGTACACGATTTCGGCTAAAATTATACAAAAATTGACCCAAAAG
2991 ATTTTGCCTCAATTTTTAGCCATAATAGTCGACAAAAATATACGACTCAAGCCAAAAAGATTGAA
711 ATTTTGCCTCAATTTTTAGCCATAATAGTCGACAAAAATATACGACTCAAGCCAAAAAGATTGAA
*
3056 CGGCCTTTCATGCTTCTAATATAGTTTTTCATATTTATTTCCGACTTAATTTCTAAGAAAATCAA
776 CGGCCTTTCATGCTTCTAATATAGTTTTTCATATTTATTTCCGAATTAATTTCTAAGAAAATCAA
* *
3121 AACAAGATTCCGATCCTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTTCGA-TAGAT
841 AACAAGATTCCGATCCTCGTAAAAACAAATCCTCAAATCGATTGTAGCTAAGATTTC-ATTACAT
* * *
3185 GAATATAGATATGTCAAAGAGTCTGCGCGCCCAAAATCAAACAAAACTGAGTCGGGATCCCGGAA
905 GAATATAGATATGCCAAAGAGTCTGCGCGCCAAAAATCAAACAAAACTGAGACGGGA-CCCGGAA
**
3250 CGCGTTTTTAGCAAAAATCCTGATGGTT
969 CGCGTTTTTAGCAAAAATAATGATGGTT
** * * * * * *
3278 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGATCTAAAAGATTTTGTCTCAATTTTTAGCC
1 AGTACACGATTTCGGCTAAAATTTTATAAAAGTGGATCAAAAAAATTTT-CCTCAATTTTTGGCC
* * * * * * * *
3343 ATAATACTC-AAGAAAAATGTACAATTC-ATGCCAAAAAGATTGAAGGGCTTTTCACGCCTCTAC
65 AGAATACTCGTA-AAAAATATATAACTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAA
* * * * * * * *
3406 TATCGTTTTTC-ATATTTGTTTCCGAATTAATTTTTAATAAAATCAAAACAAGATTCC-AATGCT
129 TATCGTTTTTCTTTTTTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAAGATTCCAAATGCT
* * * * *
3469 CGTAAAAACAAATCCTTAAATCCAATGTGGCT-AAGTTTTAGTTAG-GTGAATAAAGATATTTCA
194 CGTAAAAAC-AATTCTTTAATCCAATGTGGCTAAAATTTT-GTTAGACT-AATAAAGATATTACA
3532 AG
256 AG
3534 GAGTATGCGC
Statistics
Matches: 1116, Mismatches: 117, Indels: 38
0.88 0.09 0.03
Matches are distributed among these distances:
991 128 0.11
992 321 0.29
993 296 0.27
994 78 0.07
995 122 0.11
996 48 0.04
997 123 0.11
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (996 bp):
AGTACACGATTTCGGCTAAAATTTTATAAAAGTGGATCAAAAAAATTTTCCTCAATTTTTGGCCA
GAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
TCGTTTTTCTTTTTTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAAGATTCCAAATGCTCG
TAAAAACAATTCTTTAATCCAATGTGGCTAAAATTTTGTTAGACTAATAAAGATATTACAAGAAG
TCTGGGCGGAAAAAATCAAGCAAAACTGACCTGGGGCACTGAAACGCGTTTTGAGCAAAAACCCT
AAAGCTTAGTACACGTTTACAGCTAAAATTTTGCAAAAATAGTCCCGAAAAGTTTTTCCACAATT
TTTGGACACAATACTCATAAAAGGTATAAAATTCGACACCGAAAAGATCGAAGGGCTTTTCATGC
TTCTAATTTCGATTTCACTGATATTTTTTTCCGTATTTATTTCTAATAAAAATGAAACTGATTTC
CAAAGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATAGATA
TTTCAAGGAGTCTGGACGACAAAAATAAAAAAAACTGGACCGGGGCCCCGGAATGCGTTTTTACC
AAAAACCCTGATGGGTAGTACACGATTTCGGCTAAAATTATACAAAAATTGACCCAAAAGATTTT
GCCTCAATTTTTAGCCATAATAGTCGACAAAAATATACGACTCAAGCCAAAAAGATTGAACGGCC
TTTCATGCTTCTAATATAGTTTTTCATATTTATTTCCGAATTAATTTCTAAGAAAATCAAAACAA
GATTCCGATCCTCGTAAAAACAAATCCTCAAATCGATTGTAGCTAAGATTTCATTACATGAATAT
AGATATGCCAAAGAGTCTGCGCGCCAAAAATCAAACAAAACTGAGACGGGACCCGGAACGCGTTT
TTAGCAAAAATAATGATGGTT
Found at i:3233 original size:331 final size:329
Alignment explanation
Indices: 1286--3550 Score: 2050
Period size: 331 Copynumber: 6.8 Consensus size: 329
1276 CATACGAGCC
* ** * * * * *
1286 AGTAAACGATTTCGGCTAAAATTTTATAAAAGTGGATTCAAAAAAATTTT-CCTCAATTTTTGGC
1 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA-CCCAAAAGATTTTGCCTCAATTTTTGGC
* * * *
1350 CAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAA
65 CATAATACTCG-AAAAAATATACAACTCAA-GCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAA
* * * * **
1415 TATCGTTTTTCTTATTTTTTTTTCTGAATTAATTTCTAATTAAAGT-GAAATAAGATTGAAAATG
128 TATCGTTTTTC--ATATTTTTTTCCGAATTAATTTCTAA-TAAAATCGAAACAAGATT-CCAATG
* * * * * * *
1479 CTCGTAAAAACAATTCTTTAAATCCAATATGGCTGAGATTTTGTTAGATTAATAAAGATATTTCA
189 CTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATATTTCA
* ** * *
1544 AGGAGTCTGGGCGG-AGAAAATCAAGTAAAACTGACCTGGGGCCCTGAAACGCGTTTTTAGCAAA
254 AGGAGTCTGCGCGGCA-AAAATCAAACAAAACTGACC-GGGGCCCCGGAACGCGTTTTTAGCAAA
* *
1608 AACCCTAAAGGTT
317 AACCCTGATGGTT
* * * ** * * * * *
1621 AGTATACGTTTTTGGCTAATCTTTTGCAAAAATTGTCCCGAAAA-TTTTTTCCACAATTTTTGGA
1 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCC-AAAAGATTTTGCCTCAATTTTTGGC
* * * * * *
1685 CACAATACTC-ATAAAATGTATAAAATTCGACA-CCGAAAAGATCGAAGGGCTTTTCATGCTTCT
65 CATAATACTCGA-AAAA-ATATACAACTC-A-AGCCAAAAAGATTGAAGGGCTTTTCATGCTTCT
* * * * * *
1748 AATTTCGATTTTACTGATTTTTTTTTCCGTATTTATTTCTAATAAAAAT-GAAAC-TGATTTCCG
126 AATATCG-TTTT--TCATATTTTTTTCCGAATTAATTTCTAAT-AAAATCGAAACAAGA-TTCC-
* * * *
1811 AA-GCTCGTAAACACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATAGATAT
185 AATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATAT
* * * * * *
1875 TTCAAGGAGTTTGGGCGACAAAAAT-AAAAAAAACTGGGCCGGGGCCCCGGAATGCGTTTTTAGC
250 TTCAAGGAGTCTGCGCGGCAAAAATCAAACAAAACT-GACCGGGGCCCCGGAACGCGTTTTTAGC
1939 AAAAACCCTGATGGTT
314 AAAAACCCTGATGGTT
* * * *
1955 AGTACACGATTTCGGCTAAAATTATGCAAAAATTGACCCGAAAGGTTTTGCCTCAATTTTTAGCC
1 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATTTTGCCTCAATTTTTGGCC
* *
2020 ATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAATA
66 ATAATACTCGA-AAAAATATACAACTCAAGCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAATA
* * * * * ** *
2085 TAGTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATCAAAAGAAGATTCTGATCCTCGTA
130 TCGTTTTTCATATTTTTTTCCGAATTAATTTCTAATAAAATCGAAACAAGATTCCAATGCTCGTA
* * * * * * ** *
2150 AAAACAAATCCTCAAATCGATTGTAGCTAAGATTTCATTACATGAATATAGATATGCCAAGGGGT
195 AAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATATTTCAAGGAGT
* * * * **
2215 CTGCGCGCCAAAAATCAATCAAAACTGAGACTGGG-CCCGGAACGCGTTTTTAGCAAAAA-AATG
260 CTGCGCGGCAAAAATCAAACAAAACTGA-CCGGGGCCCCGGAACGCGTTTTTAGCAAAAACCCTG
2278 ACT-G-T
324 A-TGGTT
* ** * * * * *
2283 AGTACGCGATTTCGGCTAAAATTTTATAAAAGTGGACTCAAAAAATTTAT-CCTCAATTTTTGGA
1 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATTT-TGCCTCAATTTTTGGC
* * * * **
2347 CAGAATACTCGTAAAAAATATATAACTCAACACCAAAAAGATTAAAGGGCTTTTCACACTTCTAA
65 CATAATACTCG-AAAAAATATACAACTCAA-GCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAA
* * * * * *
2412 TATCATTTTTCTTTTTTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAAGA-TCCAAATGCT
128 TATCGTTTTTC-ATATTTTTTTCCGAATTAATTTCTAATAAAATCGAAACAAGATTCC-AATGCT
* * * * * *
2476 CGT-AAAAC-AATTCTTTAATCCAATGTGACTAAAATTTTGTTAGACT-AATATAGATATTACAA
191 CGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGA-TGAATATAGATATTTCAA
* * * * * * * *
2538 GAAGTCTGGGCGGAAAAAATCAAGCAAAACTGAGCTGGGGCACTGGAACGCGTTTTGAGCAAAAA
255 GGAGTCTGCGCGGCAAAAATCAAACAAAACTGA-CCGGGGCCCCGGAACGCGTTTTTAGCAAAAA
** **
2603 CTGTGATACTT
319 CCCTGATGGTT
* * * * *
2614 AGTACACG-TTTACAGCTAAAATTTTGCAAAAATAGTCCCGAAAAG-TTTTTCCTGAATTTTTGG
1 AGTACACGATTT-CGGCTAAAATTTTGCAAAAATTGACCC-AAAAGATTTTGCCTCAATTTTTGG
* * * * * * * *
2677 ACACAATACTC-ATAAAAGGTTTAAAATTCGACA-CCGAAAATA-TGAAAGGGCTTTTCATGCTT
64 CCATAATACTCGA-AAAA-ATATACAACTC-A-AGCCAAAAAGATTG-AAGGGCTTTTCATGCTT
* * * * * *
2739 CTAATTTCG-ATTTCACTAATTTTTTTCCGTATTTATTTCTAATAAAAAT-GAAAC-TGATTTCT
124 CTAATATCGTTTTTCA-T-ATTTTTTTCCGAATTAATTTCTAAT-AAAATCGAAACAAGA-TTCC
* * * * * *
2801 AAAGCTCGTAAAAATAAATCCTTAAATCCAATGTGGTTGAGTTTTGGTTAGATGAATATAGATAT
185 AATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATAT
* *
2866 TTCAAGGAGTCTG-GACGGCAAAAATCAAGA-AAAACTGGATCGGGGCCCCGGAATGCGTTTTTA
250 TTCAAGGAGTCTGCG-CGGCAAAAATCAA-ACAAAACT-GACCGGGGCCCCGGAACGCGTTTTTA
* *
2929 CCAAAAACCCTGATGGGT
312 GCAAAAACCCTGATGGTT
* *
2947 AGTACACGATTTCGGCTAAAATTTTACAAAAATTGACCCAAAAGATTTTGCCTCAATTTTTAGCC
1 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATTTTGCCTCAATTTTTGGCC
* * * *
3012 ATAATAGTCGACAAAAATATACGACTCAAGCCAAAAAGATTGAACGGCCTTTCATGCTTCTAATA
66 ATAATACTCGA-AAAAATATACAACTCAAGCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAATA
* * * * * * *
3077 TAGTTTTTCATATTTATTTCCGACTTAATTTCTAAGAAAATCAAAACAAGATTCCGATCCTCGTA
130 TCGTTTTTCATATTTTTTTCCGAATTAATTTCTAATAAAATCGAAACAAGATTCCAATGCTCGTA
* * * * * *
3142 AAAACAAATCCTCAAATCGATTGTGGCTAAGATTTCGATAGATGAATATAGATATGTCAAAGAGT
195 AAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATATTTCAAGGAGT
* * * ** *
3207 CTGCGCGCCCAAAATCAAACAAAACTGAGTCGGGATCCCGGAACGCGTTTTTAGCAAAAATCCTG
260 CTGCGCGGCAAAAATCAAACAAAACTGA-CCGGGGCCCCGGAACGCGTTTTTAGCAAAAACCCTG
3272 ATGGTT
324 ATGGTT
* * * *
3278 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGATCTAAAAGATTTTGTCTCAATTTTTAGCC
1 AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATTTTGCCTCAATTTTTGGCC
* * * * * * *
3343 ATAATACTCAAGAAAAATGTACAATTCATGCCAAAAAGATTGAAGGGCTTTTCACGCCTCTACTA
66 ATAATACTCGA-AAAAATATACAACTCAAGCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAATA
* * *
3408 TCGTTTTTCATATTTGTTTCCGAATTAATTTTTAATAAAATCAAAACAAGATTCCAATGCTCGTA
130 TCGTTTTTCATATTTTTTTCCGAATTAATTTCTAATAAAATCGAAACAAGATTCCAATGCTCGTA
* * * *
3473 AAAACAAATCCTTAAATCCAATGTGGCTAAGTTTTAGTTAGGTGAATAAAGATATTTCAAGGAGT
195 AAAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATATTTCAAGGAGT
* *
3538 ATGCGCGCCAAAA
260 CTGCGCGGCAAAA
3551 GTTATGCAAA
Statistics
Matches: 1548, Mismatches: 319, Indels: 130
0.78 0.16 0.07
Matches are distributed among these distances:
328 145 0.09
329 82 0.05
330 191 0.12
331 520 0.34
332 60 0.04
333 205 0.13
334 124 0.08
335 178 0.11
336 41 0.03
337 1 0.00
338 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (329 bp):
AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATTTTGCCTCAATTTTTGGCC
ATAATACTCGAAAAAATATACAACTCAAGCCAAAAAGATTGAAGGGCTTTTCATGCTTCTAATAT
CGTTTTTCATATTTTTTTCCGAATTAATTTCTAATAAAATCGAAACAAGATTCCAATGCTCGTAA
AAACAAATCCTTAAATCCAATGTGGCTAAGATTTCGTTAGATGAATATAGATATTTCAAGGAGTC
TGCGCGGCAAAAATCAAACAAAACTGACCGGGGCCCCGGAACGCGTTTTTAGCAAAAACCCTGAT
GGTT
Found at i:3784 original size:256 final size:255
Alignment explanation
Indices: 3345--3817 Score: 687
Period size: 256 Copynumber: 1.9 Consensus size: 255
3335 TTTTAGCCAT
*
3345 AATACTCAAGAAAAATGTACAATTCATGCCAAAAAGATTGAAGGGCTTTTCACGCCTCTACTATC
1 AATACTCAAGAAAAATGTACAATTCATGCCAAAAAGATTGAAGGGCTTTTCACGCCTCTAATATC
* *
3410 GTTTTTCATATTTGTTTCCGAATTAATTTTTAATAAAATCAAAACAAGATTCCAATGCTCGTAAA
66 GTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGATTCCAATGCTCGTAAA
* * *
3475 AACAAATCCTTAAATCCAATGTGGCTAAGTTTTAGTTAGGTGAATAAAGATATTTCAAGGAGTAT
131 AACAAATCCTCAAATCCAATGTGGCTAAGATTTAGTTAGATGAATAAAGATATTTCAAGGAGTAT
* *
3540 GCGCGCCAAAAGTTATGCAAAAATGAGACGGAAAACATTTTTACTCAATTTTTGGCAAAA
196 GCGCGCCAAAAATCATGCAAAAATGAGACGGAAAACATTTTTACTCAATTTTTGGCAAAA
* * * * * *
3600 AATACTCGAG-AAAATTTACAATTCTTGCCATAAATATTGAAGGGCTTTTCACGCTTCTAATATA
1 AATACTCAAGAAAAATGTACAATTCATGCCAAAAAGATTGAAGGGCTTTTCACGCCTCT-A-ATA
** * *
3664 TTTTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGATTCCGATGCTCGTC
64 TCGTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGATTCCAATGCTCGTA
* * * * **
3729 AAAACAAATCCTCAAATCCATTGTGGCTAAGATTTCGTTTGATGAATATAGATATTTGGAGGAGT
129 AAAACAAATCCTCAAATCCAATGTGGCTAAGATTTAGTTAGATGAATAAAGATATTTCAAGGAGT
* *
3794 TTTCGCGCCAAAAATCATGCAAAA
194 ATGCGCGCCAAAAATCATGCAAAA
3818 TTGACAAGGG
Statistics
Matches: 190, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
254 43 0.23
255 10 0.05
256 137 0.72
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (255 bp):
AATACTCAAGAAAAATGTACAATTCATGCCAAAAAGATTGAAGGGCTTTTCACGCCTCTAATATC
GTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGATTCCAATGCTCGTAAA
AACAAATCCTCAAATCCAATGTGGCTAAGATTTAGTTAGATGAATAAAGATATTTCAAGGAGTAT
GCGCGCCAAAAATCATGCAAAAATGAGACGGAAAACATTTTTACTCAATTTTTGGCAAAA
Found at i:4438 original size:331 final size:330
Alignment explanation
Indices: 3578--6037 Score: 2082
Period size: 331 Copynumber: 7.4 Consensus size: 330
3568 CGGAAAACAT
* * * * * * ** * *
3578 TTTTACTCAATTTTTGGCAAAAAATACTCG-AGAAAATTTACAATTC-TTGCCATAAATATTGAA
1 TTTTCCTCAATTTTTGGC-CAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAA
* * *
3641 GGGCTTTTCACGCTTCTAATATATTTTTTTTCATATTTGTTTCCGAATTAATTTCTAAGAAAATC
65 GGGCTTTTCACGCTTCTAATATA--GTTTTTCACATTTTTTTCCGAATTAATTTCTAAGAAAATC
* ** * * * * *
3706 AAAACAAGATTCCGATGCTCGTCAAAACAAATCCTCAAATCCATTGTGGCTAAGATTTCGTTTGA
128 GAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGA
** * ** * * * *
3771 TGAATATAGATATTTGGAGGAGTTTTCGCGCCAAAAATCATGCAAAATTGACAAGGGGCCCGGAA
193 TGAATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGAGACGGGGCCCGGAA
* * * * * * * *
3836 CACGTTTTTAGGAAAAAAAAAACTATGATAGTTAGTACACCATTTCGCCTAAAACTTTATAAAAA
258 CGCGTTTTTA-G--CAAAAACACTA--ATGGTTAGTACACGATTTCGGCTAAAATTTTACAAAAA
3901 TGGACCCAAAAAAA
318 TGGACCC-AAAAAA
* * * * *
3915 TTTTCCTCAATTTTTGGCTAGAATACTCGTAAAAAATACATAACTCAACGCTAAAAAGATCGAAG
1 TTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAAG
* * ** * ** *
3980 GGCTTTTTACGCTTCTAATATCGTTTTTCTTA-TTTTTTCTGAATTAATTTCTAATTAAAGCGAA
66 GGCTTTTCACGCTTCTAATATAGTTTTTCACATTTTTTTCCGAATTAATTTCTAAGAAAATCGAA
* * * * * * * * * *
4044 ATAAGTTTAAAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGGCTGCGATTTTGTTAGATT
131 ACAAGATT-CAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGATG
* * *
4109 AATATAGATATTTCAAGGAGTCTGGGCG-GAAAAA-CGAAGCAAAACTGGGTCGGGGCCCCGGAA
195 AATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATC-AAGCAAAACTGAGACGGGG-CCCGGAA
* * * * * *
4172 TGCGTTTTTAGCAAAAACCCTAAT-GTAACGTACACGATTTCGGCTAAAATTCTGCAAAAATTGA
258 CGCGTTTTTAGCAAAAACACTAATGGTTA-GTACACGATTTCGGCTAAAATTTTACAAAAATGGA
* *
4236 CCCGAAAGA
322 CCCAAAAAA
* * * * *
4245 TTTTGCCTTAATTTTTAGCCATAATATTCG-AGAAAAATATACGACTCAA-GCCAAAAAGATTGA
1 TTTT-CCTCAATTTTTGGCCAGAATACTCGTA-AAAAATATACAACTCAACGCCAAAAAGATTGA
* *
4308 AGGGCTTTTCATGCTTCTAATATATTTTTTCACATTTTGTTTCCGAATTAATTTCTAAGAAAATC
64 AGGGCTTTTCACGCTTCTAATATAGTTTTTCACATTTT-TTTCCGAATTAATTTCTAAGAAAATC
* ** * * * * * *
4373 AAAACAAGATTCTGATACTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTACGTTAGA
128 GAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGA
* * * * *
4438 TGAATACAGATATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTGAAGAC-GGGCCCGAA
193 TGAATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTG-AGACGGGGCCCGGA
* ** * * * *
4502 ACGCGTTATTAGCAAAAA-AAAAACT-G-TGGAACACGATTTCGGCTAAAATTTTATAAAAGTGG
257 ACGCGTTTTTAGCAAAAACACTAA-TGGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATGG
*
4564 ACTCAAAAAAAA
321 AC-C-CAAAAAA
*
4576 TTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAG
1 TTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAAG
* * * ** *
4641 GACTTCTCACGCTTCTAATATCA-TTTTT--CATTTTTTTCTGAATTAATTTCTAATTAAAGCGA
66 GGCTTTTCACGCTTCTAATAT-AGTTTTTCACATTTTTTTCCGAATTAATTTCTAAGAAAATCGA
* * * * * * *
4703 AACAAGATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGCCTGAGATTTTGTTAGACT
130 AACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGA-T
* ** ** *
4768 -AATATAGATATTTCAAGGTGTCTGGGCGGAAAAAATCAAGCAAAACTGAGTTGGGGCACTGGAA
194 GAATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGAGACGGGGC-CCGGAA
* ** * * * * * * *
4832 CGCGTTTTTAGTAAAAACTGTGATGGTTAGTTCACGTTTTCAGCTAAAATTTTGCAAAAATTGTC
258 CGCGTTTTTAGCAAAAACACTAATGGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATGGAC
* *
4897 CCGAAAAT
323 CCAAAAAA
* * * ** * * * **
4905 TCTTTCCTCAATTTTTGGACACAATACTCATAAAAGGTATACAATTCGACACTGAAAAGATTGAA
1 T-TTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAA
* * * * * * * *
4970 GGACTTTTCATGCTTCTAATTTCG-ATTTCACTGATTTTTTTCCGTATTTATTTCTAATAAAAAT
65 GGGCTTTTCACGCTTCTAATATAGTTTTTCAC--ATTTTTTTCCGAATTAATTTCTAA-GAAAAT
* * * *
5034 -GAAAC-CGATTTCTTAA-GCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTT
127 CGAAACAAGA-TTC-AAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTT
* * * * * * *
5096 AGATGAATATAGATATTTCAAGGAGTTTGGGTGACAAAAATCAAGAAAAAATGGGCCGGGGCCCC
190 AGATGAATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGAGACGGGG-CCC
* * * *
5161 GGAATGCGTTTTTAGCAAAAACCCTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAT
254 GGAACGCGTTTTTAGCAAAAACACTAATGGTTAGTACACGATTTCGGCTAAAATTTTACAAAAAT
** * *
5226 TAACCCGAAAGA
319 GGACCCAAAAAA
* * * *
5238 TTTTGCCTCAATTTTTAGCCATAATATTCG-AGAAAAATATACGACTCAA-GCCAAAAAGATTGA
1 TTTT-CCTCAATTTTTGGCCAGAATACTCGTA-AAAAATATACAACTCAACGCCAAAAAGATTGA
* * *
5301 AGGGCTTTTCATGCTTCTAATATAGTTTTTCACATTTGTTTCCGAATTAATTTCTAAGAAAATCA
64 AGGGCTTTTCACGCTTCTAATATAGTTTTTCACATTTTTTTCCGAATTAATTTCTAAGAAAATCG
** * * * * *
5366 AAACAAGATTCTGATCCTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTTCGTTAGAT
129 AAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGAT
* * * * **
5431 GAATACAGATATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTGAGACGGGGCCCAAAAC
194 GAATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGAGACGGGGCCCGGAAC
* ** * *
5496 GCGTTTTTAGCAAAAA-A-AAACTGTGACAGTGAACACGATTTCGGCTAAAATTTTATAAAAGTG
259 GCGTTTTTAGCAAAAACACTAA-TG-GTTAGT--ACACGATTTCGGCTAAAATTTTACAAAAATG
*
5559 GACTCAAAAAA
320 GACCCAAAAAA
* *
5570 TTTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATCGAA
1 -TTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAA
* ** * * ** *
5635 GGGCTTTTTCACGCTTCTAATATCGTTTTTCTTATTTTTTTCTGAACTAATTTCTAATTAAAGCG
65 GGGC-TTTTCACGCTTCTAATATAGTTTTTCACATTTTTTTCCGAATTAATTTCTAAGAAAATCG
* * * * * * *
5700 AAATAAGATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGGCTGAGATTTTGTTAGAC
129 AAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGA-
* * * ** * * *
5765 T-AATATAGATATTTCAAGGACTTTGGGTGGAAAAAATCAAGCAAAACTGAG-CTGGGACACTGA
193 TGAATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGAGAC-GGGGC-CCGG
** * * ** * *
5828 AACGCGTTTTTAGTTAAAAC-CGTGATGGTTAGTACACGTTTTCAACTAAAATTTTGCAAAAATT
256 AACGCGTTTTTAGCAAAAACAC-TAATGGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATG
* *
5892 GTCCCAAAAATTT
320 GACCCAAAAA--A
* * * ** * * ** *
5905 TTTTCCTCAA-TTTTGGACACAATACTCATAAAAGGTATACAATTCGACAACGAAAAGATTGAAG
1 TTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAAG
* * * **
5969 GGCTTTTCATGCTTCTAATATCGTTTTT-TC-TTATTTTTCCTGAATTAATTTCTAATTAAATCG
66 GGCTTTTCACGCTTCTAATATAGTTTTTCACATT-TTTTTCC-GAATTAATTTCTAAGAAAATCG
6032 AAACAA
129 AAACAA
6038 ATACTCATGA
Statistics
Matches: 1684, Mismatches: 379, Indels: 125
0.77 0.17 0.06
Matches are distributed among these distances:
327 2 0.00
328 117 0.07
329 67 0.04
330 199 0.12
331 359 0.21
332 211 0.13
333 334 0.20
334 161 0.10
335 75 0.04
336 98 0.06
337 29 0.02
338 32 0.02
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (330 bp):
TTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATACAACTCAACGCCAAAAAGATTGAAG
GGCTTTTCACGCTTCTAATATAGTTTTTCACATTTTTTTCCGAATTAATTTCTAAGAAAATCGAA
ACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTCGTTAGATGA
ATATAGATATTTCAAGGAGTCTGGGCGCCAAAAATCAAGCAAAACTGAGACGGGGCCCGGAACGC
GTTTTTAGCAAAAACACTAATGGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATGGACCCA
AAAAA
Found at i:5942 original size:998 final size:992
Alignment explanation
Indices: 4058--5987 Score: 3264
Period size: 998 Copynumber: 1.9 Consensus size: 992
4048 GTTTAAAAAT
* * * * * *
4058 GCTCGTAAAAACAATTCTTTTAATCCAATATGGCTGCGATTTTGTTAGATTAATATAGATATTTC
1 GCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTAGATGAATATAGATATTTC
* * * *
4123 AAGGAGTCTGGGCGGAAAAACGAAGCAAAACTGGGTCGGGGCCCCGGAATGCGTTTTTAGCAAAA
66 AAGGAGTCTGGGCGCAAAAACGAAGAAAAAATGGGCCGGGGCCCCGGAATGCGTTTTTAGCAAAA
*
4188 ACCCTAATGTAACGTACACGATTTCGGCTAAAATTCTGCAAAAATTGACCCGAAAGATTTTGCCT
131 ACCCTAATGTAACGTACACGATTTCGGCTAAAATTCTGCAAAAATTAACCCGAAAGATTTTGCCT
*
4253 TAATTTTTAGCCATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGGGCTTTTC
196 CAATTTTTAGCCATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGGGCTTTTC
*
4318 ATGCTTCTAATATATTTTTTCACATTTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGAT
261 ATGCTTCTAATATAGTTTTTCACATTTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGAT
4383 TCTGATACTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTACGTTAGATGAATACAGA
326 TCTGATACTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTACGTTAGATGAATACAGA
*
4448 TATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTGAAGACGGGCCCGAAACGCGTTATTA
391 TATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTGAAGACGGGCCCAAAACGCGTTATTA
4513 GCAAAAAAAAAACTGTGGAACACGATTTCGGCTAAAATTTTATAAAAGTGGACTCAAAAAAAATT
456 GCAAAAAAAAAACTGTGGAACACGATTTCGGCTAAAATTTTATAAAAGTGGACTCAAAAAAAATT
*
4578 TTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATTGAAGGA
521 TTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATCGAAGGA
*
4643 CTTCTCACGCTTCTAATATCATTTTTCATTTTTTTCTGAATTAATTTCTAATTAAAGCGAAACAA
586 CTTCTCACGCTTCTAATATCATTTTTCATTTTTTTCTGAACTAATTTCTAATTAAAGCGAAACAA
4708 GATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGCCTGAGATTTTGTTAGACTAATAT
651 GATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGCCTGAGATTTTGTTAGACTAATAT
** * * *
4773 AGATATTTCAAGGTGTCTGGGCGGAAAAAATCAAGCAAAACTGAGTTGGGGCACTGGAACGCGTT
716 AGATATTTCAAGGACTCTGGGCGGAAAAAATCAAGCAAAACTGAGCTGGGACACTGAAACGCGTT
* * * *
4838 TTTAGTAAAAACTGTGATGGTTAGTTCACGTTTTCAGCTAAAATTTTGCAAAAATTGTCCCGAAA
781 TTTAGTAAAAACCGTGATGGTTAGTACACGTTTTCAACTAAAATTTTGCAAAAATTGTCCCAAAA
4903 ATTCTTTCCTCAATTTTTGGACACAATACTCATAAAAGGTATACAATTCGAC-ACTGAAAAGATT
846 ATTCTTTCCTCAATTTTTGGACACAATACTCATAAAAGGTATACAATTCGACAAC-GAAAAGATT
4967 GAAGGACTTTTCATGCTTCTAATTTCGATTTCACTGATTTTTTTCCGTATTTATTTCTAATAAAA
910 GAAGGACTTTTCATGCTTCTAATTTCGATTTCACTGATTTTTTTCCGTATTTATTTCTAATAAAA
5032 ATGAAACCGATTTCTTAA
975 ATGAAACCGATTTCTTAA
* *
5050 GCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATAGATATTTC
1 GCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTAGATGAATATAGATATTTC
* *
5115 AAGGAGTTTGGGTGACAAAAATC-AAGAAAAAATGGGCCGGGGCCCCGGAATGCGTTTTTAGCAA
66 AAGGAGTCTGGGCG-CAAAAA-CGAAGAAAAAATGGGCCGGGGCCCCGGAATGCGTTTTTAGCAA
* * *
5179 AAACCCTGATGGTTA-GTACACGATTTCGGCTAAAATTTTGCAAAAATTAACCCGAAAGATTTTG
129 AAACCCTAAT-GTAACGTACACGATTTCGGCTAAAATTCTGCAAAAATTAACCCGAAAGATTTTG
5243 CCTCAATTTTTAGCCATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGGGCTT
193 CCTCAATTTTTAGCCATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGGGCTT
5308 TTCATGCTTCTAATATAGTTTTTCACA-TTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAA
258 TTCATGCTTCTAATATAGTTTTTCACATTTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAA
* *
5372 GATTCTGATCCTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTTCGTTAGATGAATAC
323 GATTCTGATACTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTACGTTAGATGAATAC
5437 AGATATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTG-AGACGGGGCCCAAAACGCGTT
388 AGATATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTGAAGAC-GGGCCCAAAACGCGTT
*
5501 TTTAGC-AAAAAAAAACTGTGACAGTGAACACGATTTCGGCTAAAATTTTATAAAAGTGGACTC-
452 ATTAGCAAAAAAAAAACTGT----G-GAACACGATTTCGGCTAAAATTTTATAAAAGTGGACTCA
*
5564 AAAAAATTTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAG
512 AAAAAAATTTTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAG
* * *
5629 ATCGAAGGGCTTTTTCACGCTTCTAATATCGTTTTTCTTATTTTTTTCTGAACTAATTTCTAATT
577 ATCGAAGGAC-TTCTCACGCTTCTAATATCATTTTTC--ATTTTTTTCTGAACTAATTTCTAATT
* *
5694 AAAGCGAAATAAGATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGGCTGAGATTTTG
639 AAAGCGAAACAAGATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGCCTGAGATTTTG
* *
5759 TTAGACTAATATAGATATTTCAAGGACTTTGGGTGGAAAAAATCAAGCAAAACTGAGCTGGGACA
704 TTAGACTAATATAGATATTTCAAGGACTCTGGGCGGAAAAAATCAAGCAAAACTGAGCTGGGACA
*
5824 CTGAAACGCGTTTTTAGTTAAAACCGTGATGGTTAGTACACGTTTTCAACTAAAATTTTGCAAAA
769 CTGAAACGCGTTTTTAGTAAAAACCGTGATGGTTAGTACACGTTTTCAACTAAAATTTTGCAAAA
*
5889 ATTGTCCCAAAAATTTTTTTCCTCAA-TTTTGGACACAATACTCATAAAAGGTATACAATTCGAC
834 ATTGTCCCAAAAA-TTCTTTCCTCAATTTTTGGACACAATACTCATAAAAGGTATACAATTCGAC
*
5953 AACGAAAAGATTGAAGGGCTTTTCATGCTTCTAAT
898 AACGAAAAGATTGAAGGACTTTTCATGCTTCTAAT
5988 ATCGTTTTTT
Statistics
Matches: 878, Mismatches: 46, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
991 17 0.02
992 232 0.26
993 189 0.22
994 4 0.00
995 73 0.08
996 62 0.07
998 288 0.33
999 13 0.01
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (992 bp):
GCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTAGATGAATATAGATATTTC
AAGGAGTCTGGGCGCAAAAACGAAGAAAAAATGGGCCGGGGCCCCGGAATGCGTTTTTAGCAAAA
ACCCTAATGTAACGTACACGATTTCGGCTAAAATTCTGCAAAAATTAACCCGAAAGATTTTGCCT
CAATTTTTAGCCATAATATTCGAGAAAAATATACGACTCAAGCCAAAAAGATTGAAGGGCTTTTC
ATGCTTCTAATATAGTTTTTCACATTTTGTTTCCGAATTAATTTCTAAGAAAATCAAAACAAGAT
TCTGATACTCGTAAAAACAAATCCTCAAATCGATTGTGGCTAAGATTACGTTAGATGAATACAGA
TATGTCAAGGAGTCTGCGCGCCAAAAATCATGCAAAACTGAAGACGGGCCCAAAACGCGTTATTA
GCAAAAAAAAAACTGTGGAACACGATTTCGGCTAAAATTTTATAAAAGTGGACTCAAAAAAAATT
TTCCTCAATTTTTGGCCAGAATACTCGTAAAAAATATATAACTCAACGCCAAAAAGATCGAAGGA
CTTCTCACGCTTCTAATATCATTTTTCATTTTTTTCTGAACTAATTTCTAATTAAAGCGAAACAA
GATCCAAATGCTCGTAAAAACAATTCTTTTAATCCAATATGCCTGAGATTTTGTTAGACTAATAT
AGATATTTCAAGGACTCTGGGCGGAAAAAATCAAGCAAAACTGAGCTGGGACACTGAAACGCGTT
TTTAGTAAAAACCGTGATGGTTAGTACACGTTTTCAACTAAAATTTTGCAAAAATTGTCCCAAAA
ATTCTTTCCTCAATTTTTGGACACAATACTCATAAAAGGTATACAATTCGACAACGAAAAGATTG
AAGGACTTTTCATGCTTCTAATTTCGATTTCACTGATTTTTTTCCGTATTTATTTCTAATAAAAA
TGAAACCGATTTCTTAA
Done.