Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017877.1 Corchorus olitorius cultivar O-4 contig17910, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19061
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:5736 original size:6 final size:6

Alignment explanation


    Indices: 5725--5750  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       5715 TAAATAATTG

                                          
       5725 AGGACA AGGACA AGGACA AGGACA AG
          1 AGGACA AGGACA AGGACA AGGACA AG

       5751 TGTCTTTTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.50, C:0.15, G:0.35, T:0.00


Consensus pattern (6 bp):   
AGGACA

Done.