Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017880.1 Corchorus olitorius cultivar O-4 contig17913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12697
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31


Found at i:6712 original size:3 final size:3

Alignment explanation


    Indices: 6704--6729  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       6694 CTCCAAAGAC

                                              
       6704 TCT TCT TCT TCT TCT TCT TCT TCT TC
          1 TCT TCT TCT TCT TCT TCT TCT TCT TC

       6730 AGAGTTGGAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65


Consensus pattern (3 bp):   
TCT

Done.