genome.fa.s17883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017883.1 Corchorus olitorius cultivar O-4 contig17916, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83324

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3436--3517	32	2.6	32	82	3	96	23	21	8	46	1.79
7310--7345	14	2.6	14	95	0	63	38	8	19	33	1.82
7918--7960	21	2.0	21	90	0	68	9	18	53	18	1.70
11023--11054	12	2.5	13	90	10	57	75	12	6	6	1.19
15428--15525	28	3.5	28	85	0	124	44	24	15	15	1.84
15779--16027	51	4.8	51	89	4	356	25	28	10	35	1.89
15779--16022	105	2.4	102	89	3	364	25	27	11	35	1.90
24084--24181	28	3.5	28	90	0	133	42	26	16	14	1.86
24063--24181	56	2.1	55	85	1	157	40	29	15	14	1.87
25813--25890	20	3.7	21	75	20	81	29	29	6	34	1.82
26950--27015	27	2.5	27	78	9	73	57	9	6	27	1.53
30485--30510	1	26.0	1	100	0	52	100	0	0	0	0.00
30963--31002	18	2.2	18	90	0	62	67	2	22	7	1.28
31806--31836	15	2.1	15	93	0	53	35	16	6	41	1.74
34837--34968	27	4.8	26	78	9	122	41	25	13	19	1.88
34860--34967	56	2.0	53	89	5	162	43	25	12	18	1.85
37860--37931	30	2.4	31	85	2	92	33	23	16	26	1.96
39362--39425	34	1.9	34	87	3	94	48	15	12	23	1.79
39953--40050	28	3.5	27	86	9	108	21	17	20	40	1.91
40176--40224	21	2.4	20	83	6	62	24	16	8	51	1.71
56446--56474	2	14.5	2	100	0	58	48	51	0	0	1.00
61123--61163	21	1.9	22	85	5	57	39	14	29	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63693--63733	21	2.0	21	85	9	57	34	29	0	36	1.58
65257--65386	65	2.0	65	96	0	242	20	30	26	21	1.98
65582--65671	21	4.3	21	95	0	162	27	26	17	27	1.98
70524--70580	28	2.1	26	87	6	78	26	22	5	45	1.73
74104--74409	76	4.0	75	82	5	312	19	24	35	20	1.95
74382--74439	30	1.9	30	82	0	71	17	20	34	27	1.95
74306--74502	106	1.9	106	91	0	322	18	23	35	22	1.96
74231--74568	182	1.9	182	90	1	543	19	24	34	21	1.96
74164--74673	258	2.0	254	84	3	657	18	24	34	21	1.96
74412--74891	223	2.1	224	84	4	608	18	23	35	22	1.96
74412--74890	76	6.4	76	82	3	542	18	23	35	22	1.96
75225--75696	153	3.2	149	80	7	525	15	25	31	27	1.96
81658--81695	18	2.1	19	90	5	60	63	0	31	5	1.17

Tables:   1

The End!