genome.fa.s17884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017884.1 Corchorus olitorius cultivar O-4 contig17917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174243

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
743--859	33	3.5	33	82	6	139	13	30	13	41	1.83
743--875	33	4.0	33	82	1	124	13	30	14	42	1.84
1906--1957	27	1.9	27	100	0	104	34	30	3	30	1.76
1902--1968	15	4.7	15	76	10	77	29	29	5	34	1.81
2701--2797	32	3.0	32	86	5	126	29	19	17	32	1.95
2871--2897	12	2.2	12	100	0	54	51	29	11	7	1.64
10231--10333	51	2.0	50	81	5	118	20	21	13	44	1.85
17865--17913	24	2.0	25	92	4	82	46	22	30	0	1.52
21380--21462	40	2.1	40	97	0	157	30	9	19	40	1.83
27118--27166	3	16.3	3	100	0	98	0	34	0	65	0.93
28690--28729	2	20.0	2	89	0	62	0	45	0	55	0.99
35495--35564	36	1.9	36	91	0	113	34	18	10	37	1.84
40102--40129	2	14.0	2	100	0	56	50	0	0	50	1.00
40730--40791	31	2.0	31	96	0	115	30	22	4	41	1.74
41411--41595	93	2.0	93	93	0	316	33	12	2	51	1.51
43633--43752	52	2.3	52	100	0	240	39	11	25	23	1.89
44461--44546	27	3.1	27	86	5	111	18	18	25	37	1.94
44496--44553	27	2.1	27	87	3	80	18	24	25	31	1.98
47629--47660	2	16.0	2	100	0	64	50	0	0	50	1.00
52403--52651	128	1.9	129	89	1	383	37	10	2	49	1.49
57589--57652	19	3.7	17	86	12	78	79	0	20	0	0.73
57603--57652	24	2.0	25	96	3	93	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57589--57653	13	5.0	13	83	11	71	80	0	20	0	0.72
57603--57652	6	8.2	6	87	12	75	80	0	20	0	0.72
58557--58609	28	1.9	28	84	3	72	26	16	15	41	1.88
61318--61411	45	2.2	43	88	7	138	39	21	5	34	1.76
64613--64675	32	2.0	32	100	0	126	19	22	31	26	1.97
64650--64788	73	1.9	75	93	3	246	17	37	24	20	1.94
65038--65131	45	2.2	43	87	11	131	37	24	5	32	1.78
67389--67425	13	2.8	13	95	0	65	64	2	13	18	1.39
69570--69609	21	1.9	21	85	10	55	22	17	27	32	1.96
70523--70589	5	13.4	5	100	0	134	59	40	0	0	0.97
75215--75241	2	13.5	2	100	0	54	0	0	48	51	1.00
75263--75297	2	17.5	2	100	0	70	0	0	48	51	1.00
80852--80882	2	15.5	2	100	0	62	51	0	48	0	1.00
83046--83083	2	19.5	2	94	5	69	47	0	0	52	1.00
86554--86583	11	2.7	11	89	0	51	43	10	16	30	1.81
86596--86883	95	3.0	95	98	0	567	35	15	10	38	1.82
91059--91093	11	3.2	11	83	0	52	77	17	5	0	0.96
98073--98108	17	2.0	19	89	10	58	36	2	0	61	1.11
102308--102335	7	4.0	7	100	0	56	57	28	0	14	1.38
102533--102564	5	6.4	5	100	0	64	59	0	0	40	0.97
103324--103350	2	13.5	2	100	0	54	51	0	0	48	1.00
103846--103935	32	2.8	33	94	3	164	34	30	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103847--103953	19	6.2	19	68	26	85	35	29	0	34	1.58
104348--104388	17	2.3	18	91	4	66	36	4	2	56	1.34
110709--110740	3	11.0	3	93	6	57	34	0	0	65	0.93
111291--111333	20	2.2	20	87	8	61	39	6	0	53	1.28
111327--111361	17	2.0	18	88	5	54	45	5	0	48	1.26
122453--122500	12	3.9	12	91	2	78	27	25	12	35	1.92
122453--122507	25	2.2	24	93	3	92	29	21	14	34	1.93
137768--137814	24	2.0	24	87	8	69	34	14	29	21	1.93
138322--138355	2	17.0	2	100	0	68	50	0	0	50	1.00
141632--141666	16	2.2	16	89	0	52	54	2	0	42	1.15
142756--142790	18	1.9	18	88	11	54	17	37	20	25	1.94
143086--143154	28	2.5	28	93	6	115	30	18	17	33	1.94
144105--144289	22	8.5	22	74	15	120	34	15	10	40	1.82
144105--144207	43	2.4	44	79	9	115	36	12	11	38	1.80
144191--144290	21	4.6	21	74	10	85	32	16	10	42	1.81
144234--144308	21	3.6	20	80	8	71	25	18	9	46	1.79
144552--144641	45	2.0	45	93	0	153	30	13	14	42	1.84
146529--146584	22	2.8	18	78	21	67	30	3	7	58	1.42
146536--146615	21	3.7	20	78	16	81	31	5	7	56	1.49
152693--152735	22	2.0	21	95	4	77	46	6	9	37	1.63
159695--159733	21	1.9	20	84	5	51	41	10	23	25	1.86
162735--162806	35	2.1	35	100	0	144	8	8	31	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166920--166977	24	2.4	24	88	0	89	24	41	12	22	1.87
172882--172920	20	2.0	20	100	0	78	35	25	2	35	1.70

Tables:   1

The End!