Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017885.1 Corchorus olitorius cultivar O-4 contig17918, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27522

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1232--1256
11
2.3
11
100
0
50
8
0
28
64
1.22
7205--7259
21
2.6
21
77
11
67
52
1
0
45
1.11
7217--7264
21
2.1
22
85
11
62
56
2
2
39
1.23
12417--12445
15
1.9
15
100
0
58
34
13
17
34
1.89
14750--14793
23
2.0
22
86
4
61
72
2
22
2
1.07
15951--15978
5
5.6
5
100
0
56
57
0
0
42
0.99
15976--16022
19
2.4
19
92
7
76
40
0
0
59
0.97
16614--16705
41
2.2
41
90
3
141
21
19
31
27
1.97
17974--17999
8
3.2
8
100
0
52
23
11
11
53
1.69
18113--18170
29
2.0
29
100
0
116
31
17
27
24
1.97
20094--20122
11
2.6
11
100
0
58
51
17
20
10
1.74
20132--20231
31
3.3
30
73
10
105
31
22
12
35
1.90
20905--20947
22
1.9
23
81
13
54
37
0
20
41
1.53
21513--21600
29
2.9
31
72
13
85
34
10
22
32
1.88
21514--21612
31
3.3
31
73
11
98
34
10
23
32
1.88
22397--22456
21
3.2
21
60
30
53
35
20
5
40
1.74
22397--22467
35
2.0
35
100
0
142
35
19
5
39
1.76
24828--24975
31
4.8
31
78
3
145
31
22
25
20
1.98
24828--24975
62
2.4
62
76
0
170
31
22
25
20
1.98

Tables:   1

The End!