Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001789.1 Corchorus olitorius cultivar O-4 contig01789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 929

Length: 1549
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39


Found at i:611 original size:15 final size:15

Alignment explanation


    Indices: 593--626  Score: 68
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        583 TTTGTTGTTG

                           
        593 GATTGTTTTTGGATT
          1 GATTGTTTTTGGATT

                           
        608 GATTGTTTTTGGATT
          1 GATTGTTTTTGGATT

                
        623 GATT
          1 GATT

        627 ATCCCCCAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59


Consensus pattern (15 bp):   
GATTGTTTTTGGATT
Done.