Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017890.1 Corchorus olitorius cultivar O-4 contig17923, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28826
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:3713 original size:222 final size:222
Alignment explanation
Indices: 3252--3782 Score: 929
Period size: 222 Copynumber: 2.4 Consensus size: 222
3242 TTGACGCAAC
*
3252 AGGAATGCTGAAAAGTCTTGAGTTAGTTCATTAGAATGATTGGGATAGGATATATATAGTCATCA
1 AGGAATGCTGAAAAGTCTTGAGTTAGTTCATTAGAATGATTGAGATAGGATATATATAGTCATCA
3317 ATTACTTCGTTATTAATTCTCATGTGGTAACTAAAATAGTCAACTCTATTTTCTAACTTTTATTT
66 ATTACTTCGTTATTAATTCTCATGTGGTAACTAAAATAGTCAACTCTATTTTCTAACTTTTATTT
* * *
3382 AGTCATACTTATCAAAGAACATTAAAGATCTATTAGCAGTGTGAATGTGGGGGTTGATAATATGA
131 AGTCATACTTATCAAAAAACATTAAAGATCTATTAGCAGTGTAAATGTGAGGGTTGATAATATGA
*
3447 GCTTGAAAGTAGTACTATATACCTAAT
196 GCTTAAAAGTAGTACTATATACCTAAT
*
3474 AGGAATGCTGAAAAGTCTTGAGTTAGTTCATTAGAACGATTGAGATAGGATATATATAGTCATCA
1 AGGAATGCTGAAAAGTCTTGAGTTAGTTCATTAGAATGATTGAGATAGGATATATATAGTCATCA
*
3539 ATTACTTCGATATTAATTCTCATGTGGTAACTAAAATAGTCAACTCTATTTTCTAACTTTTATTT
66 ATTACTTCGTTATTAATTCTCATGTGGTAACTAAAATAGTCAACTCTATTTTCTAACTTTTATTT
* *
3604 AGTCATACTTGTCAAAAAAACATTAAAGATTTATTAGCAGTGTAAATGTGAGGGTTGATAATATG
131 AGTCATACTTATC-AAAAAACATTAAAGATCTATTAGCAGTGTAAATGTGAGGGTTGATAATATG
3669 AGCTTAAAAGTAGTACTATATACCTAAT
195 AGCTTAAAAGTAGTACTATATACCTAAT
* * *
3697 AGGAATGCTG-AAAGTCTTGAGTTAGTTTATTAGAATGATTGCGATAGGTTATATATAGTCATCA
1 AGGAATGCTGAAAAGTCTTGAGTTAGTTCATTAGAATGATTGAGATAGGATATATATAGTCATCA
*
3761 ATTACATCGTTATTAATTCTCA
66 ATTACTTCGTTATTAATTCTCA
3783 CAAGCACGCC
Statistics
Matches: 293, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
222 209 0.71
223 84 0.29
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (222 bp):
AGGAATGCTGAAAAGTCTTGAGTTAGTTCATTAGAATGATTGAGATAGGATATATATAGTCATCA
ATTACTTCGTTATTAATTCTCATGTGGTAACTAAAATAGTCAACTCTATTTTCTAACTTTTATTT
AGTCATACTTATCAAAAAACATTAAAGATCTATTAGCAGTGTAAATGTGAGGGTTGATAATATGA
GCTTAAAAGTAGTACTATATACCTAAT
Found at i:3896 original size:42 final size:43
Alignment explanation
Indices: 3845--3938 Score: 120
Period size: 45 Copynumber: 2.2 Consensus size: 43
3835 AGTGCGTTAC
* **
3845 CTAA-ATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAAAG
1 CTAATATTCTACCTCCATATCTAAATAATTCATCAAAATAAAG
3886 CTAATATTCTACTCCTCCATATCTAAATAATTCATCAAAATAAAG
1 CTAATATTCTA--CCTCCATATCTAAATAATTCATCAAAATAAAG
*
3931 GTAATATT
1 CTAATATT
3939 AATTGTTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
41 4 0.09
42 6 0.13
45 35 0.78
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.34
Consensus pattern (43 bp):
CTAATATTCTACCTCCATATCTAAATAATTCATCAAAATAAAG
Found at i:4917 original size:3 final size:3
Alignment explanation
Indices: 4911--4983 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
4901 TATAGCATAT
4911 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4959 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
4984 AATCACGAAC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6356 original size:332 final size:330
Alignment explanation
Indices: 5609--6866 Score: 1180
Period size: 332 Copynumber: 3.8 Consensus size: 330
5599 ATACTTTACA
* * * * * * * * **
5609 TCATTTAACCAAATCGCAGCAATATTGGATTTAAAAATTTGTTTTCACGAGTATCAAAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * *
5674 TTCGATTTAATTAGAAATTAATTTAGAAAAAATAAT-AGACATGATATTAAAAGTGTAAAAAGCC
66 TTCGATTTAATTAGAAATTAATTTAGAAAAAAT-ATGAAAAACGATATTAAAAGCGTGAAAAGCC
** *
5738 CTCCAATCTTTTTGGAATTG-AATCATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGAGA-
130 CTCCAATCTTTTTGGCGTTGAAAT-ATATTTTTTTATGAGTATTTTAGCCAAAAATTGAGGA-AT
* * * ** * * * * * *
5801 AATCATTCGTGTCAATTTTTGTAAAATTTTCGCCAAAATCGTGTACTAACAAACCATCACGGTTT
193 TATCTTTCGGGTCAATTTTTACAAAATTTTAGCCGAAAT-ATGT-GTAA-TAACCATCACAGTTT
** * * ** * * *
5866 TTGGCTAAATCA-CATTCCGAAGACCCGGCT-CGATTTTGCATGATCTTTGCCTCCGAGACTACT
255 TTGGCTAAAAAAGCGTTCTGGGGACCCGGCTCCG-TTTTGCATGATTTTTGGCACC-AGACTACT
* *
5929 TCAAATATCTATAT
318 T-TAATATCCATAT
* * *
5943 TTATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * *
6008 TTTGATTTAATTAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTGGAAA-CGTCAAAAGCC
66 TTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATT-AAAAGCGTGAAAAGCC
*
6072 CTTCAATCTTTTTGGCGTTGAAATATATTTTTTTATGAGTATTTTAGCCAAAAAATTGAGGAATT
130 CTCCAATCTTTTTGGCGTTGAAATATATTTTTTTATGAGTATTTTAGCC-AAAAATTGAGGAATT
* *
6137 ATCTTTCGGGTCAATTTTTACAAAAGTTTAGCCGAAAT-TGTGTAATAACCATCAAAGTTTTTGG
194 ATCTTTCGGGTCAATTTTTACAAAATTTTAGCCGAAATATGTGTAATAACCATCACAGTTTTTGG
* * *
6201 CTAAAAAAGTGTTCTGGGGTCCCGGCTCCGTTTTGCATGATTTTTGGCACCAAGACTCCTTTAGA
259 CTAAAAAAGCGTTCTGGGGACCCGGCTCCGTTTTGCATGATTTTTGGCACC-AGACTACTTTA-A
6266 TATCCATAT
322 TATCCATAT
* *
6275 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGATTTTACAAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
* * * **
6340 TTCGATTTATTTAGAAATTAATTCAG-AAAAATATGAAAAACGATACTAAAAGCGTGAAAAGTTC
66 TTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCC
* * * * * *
6404 TCCAATCTTTCTGACGTT-AAATTATATATATTTTATGAGTATTTCATCCAAAAATTGAGTAAAA
131 TCCAATCTTTTTGGCGTTGAAA-TATAT-TTTTTTATGAGTATTTTAGCCAAAAATTGAG--GAA
*
6468 TT-T-TTTCGGGTC-ATTTTTCGCAAAATTTTAGCC-AAATTAAAATCGTGTACA-AACCATCAC
192 TTATCTTTCGGGTCAATTTTT-ACAAAATTTTAGCCGAAA-T---AT-GTGTA-ATAACCATCAC
* * ** * * **
6528 AGTTTTTGGCTAAAAACGCGTT-TCGGGGCCCCAACTCAGTTTTGCATGATTTTTTTGCGGC-GA
250 AGTTTTTGGCTAAAAAAGCGTTCT-GGGGACCCGGCTCCGTTTTGCATGA-TTTTTGGCACCAGA
* *
6591 C-AC-TT-CT-T-GA-A-
313 CTACTTTAATATCCATAT
* * * **
6602 TCATCTAATAAAATCTTAGTCACATTACATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
* ** *
6667 TTCGATTTAATTAGAAATTAAATTAGACGAAATATGAAAAACGATATTAAAAGCATGAAAAGCCC
66 TTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCC
* * * * * * *
6732 TTCAATATTTTTGGCGTTAAATTATATATTTTTTTATGAGTATTATGGCTAAAAATTGAGGAAAT
131 TCCAATCTTTTTGGCGTTGAA--ATATATTTTTTTATGAGTATTTTAGCCAAAAATTGAGGAATT
*** * * *
6797 ATCTTTCAAAT-ACATTTTTACAAAATTTTAGCCGAAAT-TGAGTAATAATCATCACGGTTTTTG
194 ATCTTTCGGGTCA-ATTTTTACAAAATTTTAGCCGAAATATGTGTAATAACCATCACAGTTTTTG
6860 GCTAAAA
258 GCTAAAA
6867 TTAGTTTTGA
Statistics
Matches: 766, Mismatches: 125, Indels: 76
0.79 0.13 0.08
Matches are distributed among these distances:
323 1 0.00
324 26 0.03
325 1 0.00
327 84 0.11
328 48 0.06
329 47 0.06
330 30 0.04
331 105 0.14
332 151 0.20
333 12 0.02
334 144 0.19
335 54 0.07
336 54 0.07
337 9 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (330 bp):
TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCC
TCCAATCTTTTTGGCGTTGAAATATATTTTTTTATGAGTATTTTAGCCAAAAATTGAGGAATTAT
CTTTCGGGTCAATTTTTACAAAATTTTAGCCGAAATATGTGTAATAACCATCACAGTTTTTGGCT
AAAAAAGCGTTCTGGGGACCCGGCTCCGTTTTGCATGATTTTTGGCACCAGACTACTTTAATATC
CATAT
Found at i:8104 original size:26 final size:27
Alignment explanation
Indices: 8071--8129 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 27
8061 ATCCAATATT
8071 TTATTTTTT-TAAATTATGAAAAGATA
1 TTATTTTTTGTAAATTATGAAAAGATA
*
8097 TTATTTTTTGAGGTTAATTATGAAAAGATA
1 TTATTTTTT---GTAAATTATGAAAAGATA
8127 TTA
1 TTA
8130 ATAATCTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 9 0.32
30 19 0.68
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (27 bp):
TTATTTTTTGTAAATTATGAAAAGATA
Found at i:8778 original size:26 final size:27
Alignment explanation
Indices: 8745--8803 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 27
8735 ATCCAATATT
8745 TTATTTTTT-TAAATTATGAAAAGATA
1 TTATTTTTTGTAAATTATGAAAAGATA
*
8771 TTATTTTTTGAGGTTAATTATGAAAAGATA
1 TTATTTTTT---GTAAATTATGAAAAGATA
8801 TTA
1 TTA
8804 ATAATCTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 9 0.32
30 19 0.68
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (27 bp):
TTATTTTTTGTAAATTATGAAAAGATA
Found at i:11482 original size:2 final size:2
Alignment explanation
Indices: 11477--11509 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11467 GTGTGTGTAG
11477 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11510 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11514 original size:2 final size:2
Alignment explanation
Indices: 11509--11556 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
11499 TATATATATA
11509 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
11551 TG TG TG
1 TG TG TG
11557 ATTTACCCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:11980 original size:22 final size:21
Alignment explanation
Indices: 11955--12065 Score: 96
Period size: 22 Copynumber: 5.0 Consensus size: 21
11945 ACAATCAAAC
* *
11955 CAAAATTACATGAGAAGGTTAT
1 CAAAATTTCAT-AAAAGGTTAT
* *
11977 CAAAATTTCATACAGAGGTTAC
1 CAAAATTTCATA-AAAGGTTAT
11999 CAAAATTTCATAAAAAGGTTAT
1 CAAAATTTCAT-AAAAGGTTAT
* ** *
12021 CAAAATTTCGTAGGGAGGTTAA
1 CAAAATTTCATA-AAAGGTTAT
*
12043 CAAAATATCATAGAAAGGTTAT
1 CAAAATTTCATA-AAAGGTTAT
12065 C
1 C
12066 GCAATGTTAT
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
21 2 0.03
22 68 0.96
23 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (21 bp):
CAAAATTTCATAAAAGGTTAT
Found at i:12017 original size:44 final size:44
Alignment explanation
Indices: 11953--12065 Score: 145
Period size: 44 Copynumber: 2.6 Consensus size: 44
11943 TGACAATCAA
* * *
11953 ACCAAAATTACATGAGAAGGTTATCAAAATTTCATACAGAGGTT
1 ACCAAAATTTCATAAAAAGGTTATCAAAATTTCATACAGAGGTT
* **
11997 ACCAAAATTTCATAAAAAGGTTATCAAAATTTCGTAGGGAGGTT
1 ACCAAAATTTCATAAAAAGGTTATCAAAATTTCATACAGAGGTT
* * *
12041 AACAAAATATCATAGAAAGGTTATC
1 ACCAAAATTTCATAAAAAGGTTATC
12066 GCAATGTTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.27
Consensus pattern (44 bp):
ACCAAAATTTCATAAAAAGGTTATCAAAATTTCATACAGAGGTT
Found at i:12494 original size:22 final size:24
Alignment explanation
Indices: 12469--12529 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 24
12459 CAAGCTAGTA
12469 GTTATCAAAATTTAATA-A-GAAG
1 GTTATCAAAATTTAATAGAGGAAG
* *
12491 GTTAACAAAATTTCATAGGGAGGAAG
1 GTTATCAAAATTTAATA--GAGGAAG
12517 GTTATCAAAATTT
1 GTTATCAAAATTT
12530 TTGCTTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 15 0.47
25 1 0.03
26 16 0.50
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (24 bp):
GTTATCAAAATTTAATAGAGGAAG
Found at i:12578 original size:22 final size:22
Alignment explanation
Indices: 12553--12808 Score: 151
Period size: 22 Copynumber: 11.4 Consensus size: 22
12543 TTTCCTAAAA
*
12553 AGGTTAACAAAATTTCATAGGG
1 AGGTTATCAAAATTTCATAGGG
* *
12575 AGGTTATGAAAATTTTAT-GGAG
1 AGGTTATCAAAATTTCATAGG-G
*
12597 AGGTTATCAAAATTAT-ATAGAG
1 AGGTTATCAAAATT-TCATAGGG
* *
12619 AGGATATCACAGTTTCATTCTCATAGGG
1 AGGTTATCA-A----AATT-TCATAGGG
* *
12647 AGGTTATCTAAATTTCAT-GCTG
1 AGGTTATCAAAATTTCATAG-GG
* * *
12669 TGGTTATCAAAATTTTAT-GAGC
1 AGGTTATCAAAATTTCATAG-GG
*
12691 AGGTTATCAAAATTTTATAGGG
1 AGGTTATCAAAATTTCATAGGG
** * **
12713 AAATTATCAAAATTTCACAATG
1 AGGTTATCAAAATTTCATAGGG
*
12735 AGGTTATCAAAATTTCATAGTG
1 AGGTTATCAAAATTTCATAGGG
* * * ** *
12757 TGGTTATTAAGATTTCACCGTG
1 AGGTTATCAAAATTTCATAGGG
* * *
12779 TGGTTATCAAATTTTCACAGGG
1 AGGTTATCAAAATTTCATAGGG
12801 AGGTTATC
1 AGGTTATC
12809 GACCATTTCA
Statistics
Matches: 181, Mismatches: 42, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.02
22 154 0.85
23 7 0.04
27 5 0.03
28 12 0.07
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (22 bp):
AGGTTATCAAAATTTCATAGGG
Found at i:12772 original size:44 final size:44
Alignment explanation
Indices: 12646--12862 Score: 143
Period size: 44 Copynumber: 4.9 Consensus size: 44
12636 TTCTCATAGG
* * **
12646 GAGGTTATCTAAATTTCAT-GCTGTGGTTATCAAAATTTTATGA-
1 GAGGTTATCAAAATTTCATAG-TGTGGTTATCAAAATTTCACAAT
* * ***
12689 GCAGGTTATCAAAATTTTATAGGGAAATTATCAAAATTTCACAAT
1 G-AGGTTATCAAAATTTCATAGTGTGGTTATCAAAATTTCACAAT
* * **
12734 GAGGTTATCAAAATTTCATAGTGTGGTTATTAAGATTTCACCGT
1 GAGGTTATCAAAATTTCATAGTGTGGTTATCAAAATTTCACAAT
* * * * * ** *
12778 GTGGTTATCAAATTTTCACAGGGAGGTTATCGACCATTTCATAAT
1 GAGGTTATCAAAATTTCATAGTGTGGTTATC-AAAATTTCACAAT
* * * * *
12823 AAGGTTATC-AAATGTTCACAGTATTGTTATCAATATTTCA
1 GAGGTTATCAAAAT-TTCATAGTGTGGTTATCAAAATTTCA
12863 ATGTTGGAGC
Statistics
Matches: 131, Mismatches: 38, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
43 1 0.01
44 100 0.76
45 30 0.23
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (44 bp):
GAGGTTATCAAAATTTCATAGTGTGGTTATCAAAATTTCACAAT
Found at i:13853 original size:48 final size:48
Alignment explanation
Indices: 13756--13853 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
13746 ATGAATGGTC
* * *
13756 TTAAATTTGTTGATACATATATAACTTTTTTCATAATCATTATAGCTT
1 TTAAATTTGTTAATACATATATAACTTTTTTCATAATCATTACAACTT
*
13804 TTAAATTTGTTAATACATATATAACTTTTTTCATAATCGTTACAACTT
1 TTAAATTTGTTAATACATATATAACTTTTTTCATAATCATTACAACTT
13852 TT
1 TT
13854 TCAGTAACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (48 bp):
TTAAATTTGTTAATACATATATAACTTTTTTCATAATCATTACAACTT
Found at i:15499 original size:30 final size:29
Alignment explanation
Indices: 15465--15522 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
15455 AGTTTTTGAT
* *
15465 CAAACCCTTGTAGTTTTTAAAAATAATTCC
1 CAAACCATTGTA-CTTTTAAAAATAATTCC
* *
15495 CAAACTATTGTACTTTTAAAACTAATTC
1 CAAACCATTGTACTTTTAAAAATAATTC
15523 TTATTTTCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (29 bp):
CAAACCATTGTACTTTTAAAAATAATTCC
Done.