genome.fa.s17895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017895.1 Corchorus olitorius cultivar O-4 contig17928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  248595

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1486	658	2.3	653	84	4	1935	33	14	15	36	1.88
1--1475	326	4.5	325	79	8	1549	33	14	15	36	1.87
2123--2178	19	3.0	18	84	5	58	41	16	14	28	1.87
9200--9297	8	12.4	8	77	18	107	24	23	1	51	1.55
9209--9296	31	2.9	29	83	11	97	25	22	1	51	1.55
9259--9310	24	2.2	24	82	0	59	32	19	0	48	1.49
9554--9583	15	1.9	16	93	6	53	43	0	3	53	1.17
9946--15057	332	15.6	331	76	9	3746	33	14	15	36	1.88
9946--15042	989	5.2	968	76	11	3541	33	14	15	36	1.88
17377--17425	21	2.3	20	82	10	53	51	12	24	12	1.73
18768--18850	31	2.8	30	83	3	105	44	18	20	16	1.87
18927--19001	30	2.5	30	84	2	89	40	10	24	25	1.87
18946--19009	30	2.2	30	82	2	76	46	10	21	20	1.81
20037--20117	29	2.8	30	86	5	112	43	17	17	22	1.88
20046--20148	31	3.5	28	86	6	116	45	20	16	17	1.85
21173--21300	60	2.1	60	83	8	154	34	17	19	28	1.95
26533--26557	13	1.9	13	100	0	50	40	36	0	24	1.55
28968--29004	5	7.6	5	88	11	51	0	13	0	86	0.57
28972--29004	9	3.6	9	92	8	57	0	12	0	87	0.53
29495--29519	13	1.9	13	100	0	50	20	0	40	40	1.52
29666--29773	55	2.0	55	81	3	128	37	30	17	14	1.90
30268--30312	19	2.3	20	82	17	60	37	24	0	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32525--35782	328	9.9	330	76	10	2447	37	15	13	32	1.88
45862--47438	326	4.8	331	80	6	1505	34	14	14	36	1.86
47827--49477	331	5.0	329	79	6	1626	32	14	15	36	1.88
58715--58739	13	1.9	13	100	0	50	56	0	4	40	1.18
60537--60561	13	1.9	13	100	0	50	44	0	0	56	0.99
60699--60739	22	1.9	21	85	5	55	39	2	0	58	1.11
60707--60768	30	2.1	30	96	0	115	45	4	0	50	1.23
64694--64749	12	4.8	11	76	14	51	78	1	19	0	0.84
64692--64736	9	4.8	9	81	10	54	80	0	20	0	0.72
65771--65803	17	1.9	17	88	11	50	0	18	3	78	0.87
65769--65805	20	1.9	20	94	5	67	0	16	2	81	0.81
82659--82695	19	1.9	19	88	0	56	32	18	10	37	1.86
83004--83032	14	2.0	15	93	6	51	37	0	0	62	0.96
92794--92827	3	11.3	3	93	0	59	32	64	0	2	1.08
93940--94022	30	2.8	30	80	10	91	19	22	12	45	1.83
93938--94023	29	2.9	28	75	13	75	18	23	12	45	1.84
97615--97677	28	2.2	28	100	0	126	53	22	3	20	1.59
98867--98930	31	2.1	31	90	0	101	31	6	25	37	1.81
100203--100248	21	2.2	21	92	0	74	15	36	17	30	1.91
103817--103880	31	2.1	31	90	0	101	31	6	25	37	1.81
113377--113718	171	2.0	168	95	1	612	28	15	19	37	1.91
117754--117783	15	1.9	16	93	6	53	43	0	3	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118147--122852	330	14.4	329	74	9	3202	33	14	15	36	1.88
120153--122852	333	8.1	329	75	9	1877	33	14	15	36	1.88
122055--122089	2	18.0	2	94	5	63	51	0	0	48	1.00
123372--123469	27	3.7	27	70	23	82	40	4	3	52	1.36
123391--123466	25	3.0	25	71	19	75	39	5	3	51	1.43
124605--124641	2	18.5	2	89	10	58	48	2	0	48	1.15
125354--125392	17	2.3	17	86	0	51	38	0	2	58	1.12
125361--125393	17	1.9	17	93	0	57	39	0	0	60	0.97
137251--137293	2	21.0	2	95	4	77	48	2	0	48	1.14
139244--139307	30	2.1	30	88	0	92	45	10	9	34	1.72
153370--153451	45	1.9	43	87	9	123	36	23	4	35	1.76
154549--154804	123	2.0	124	87	6	361	37	10	2	49	1.50
159880--159946	25	2.6	26	90	2	100	29	5	16	47	1.70
168177--168226	21	2.6	18	79	17	55	34	6	22	38	1.78
168497--168788	148	2.0	149	94	0	514	36	13	8	42	1.74
169971--170029	21	3.0	19	80	5	64	33	16	11	37	1.86
170662--170719	29	1.9	30	89	6	91	36	8	10	44	1.69
170662--170737	31	2.4	31	84	4	89	39	9	9	42	1.69
171673--171772	49	2.0	49	96	0	182	36	16	11	37	1.83
190742--190822	40	2.0	40	90	4	128	27	28	6	38	1.80
194558--194586	12	2.5	12	94	5	51	34	27	0	37	1.57
195495--195522	5	5.6	5	100	0	56	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205288--205322	18	1.9	18	100	0	70	28	31	34	5	1.81
221184--221222	19	2.1	19	100	0	78	41	15	10	33	1.81
228576--229242	176	3.7	177	89	6	1031	31	20	13	34	1.91
228875--229290	190	2.2	189	93	3	712	30	21	12	35	1.90
229307--229334	2	14.0	2	100	0	56	50	0	0	50	1.00
231365--231400	17	2.1	17	89	0	54	38	19	11	30	1.86
234923--234972	15	3.0	17	86	11	68	18	36	10	36	1.84
236007--236214	108	1.9	107	96	0	380	39	15	10	34	1.81
241677--241760	30	2.6	31	83	7	107	27	10	17	44	1.82
241672--241785	34	3.4	34	80	9	137	25	12	19	42	1.86
244486--244526	21	2.0	21	85	0	55	7	36	12	43	1.70

Tables:   1

The End!