Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017900.1 Corchorus olitorius cultivar O-4 contig17933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29162

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1868
331
5.6
331
83
6
2176
34
17
14
33
1.90
1--1880
658
2.8
659
81
6
2200
34
17
14
33
1.90
2096--2133
16
2.4
17
83
16
55
7
15
34
42
1.76
2096--2169
15
4.8
16
74
12
73
9
14
36
39
1.79
2096--2169
31
2.4
31
86
4
96
9
14
36
39
1.79
7238--7275
16
2.4
16
87
12
53
7
15
39
36
1.77
13773--14010
70
3.5
68
82
8
263
24
20
12
42
1.87
15653--15699
23
2.0
23
91
0
76
25
10
29
34
1.90
16501--16582
42
2.0
42
95
0
146
40
21
6
31
1.78
25656--25792
66
2.1
66
88
0
202
39
19
28
12
1.88
25672--25802
66
2.0
66
93
0
226
38
19
29
12
1.88
25839--26032
33
5.9
33
82
3
221
32
12
46
7
1.71
25826--26041
66
3.3
65
82
5
238
35
12
45
6
1.68
25826--26041
99
2.2
99
84
0
297
35
12
45
6
1.68
26131--26221
33
2.8
33
100
0
182
42
21
29
5
1.75
28505--28538
15
2.3
15
90
10
52
50
5
8
35
1.58
28307--28708
213
1.9
213
88
3
612
41
13
14
30
1.84

Tables:   1

The End!