Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017901.1 Corchorus olitorius cultivar O-4 contig17934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64712
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:14 original size:2 final size:2
Alignment explanation
Indices: 8--43 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1 GTATTTG
8 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
44 AGATTGATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:692 original size:2 final size:2
Alignment explanation
Indices: 675--720 Score: 65
Period size: 2 Copynumber: 21.5 Consensus size: 2
665 CGTCATAATC
675 TA TA GTA TA TA CTA TA TA GTA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
718 TA T
1 TA T
721 TATGCAATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 35 0.85
3 6 0.15
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (2 bp):
TA
Found at i:5886 original size:31 final size:30
Alignment explanation
Indices: 5851--5926 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
5841 GGAGATGAGC
* *
5851 AATAAAGAGTAAAACGATTTCGTGTTTTACA
1 AATAAAG-GCAAAACGATTTCGGGTTTTACA
* * *
5882 AATAAGGGCAAAACGTTTTCGGGTTTTTCA
1 AATAAAGGCAAAACGATTTCGGGTTTTACA
*
5912 AAAAAAGGCAAAACG
1 AATAAAGGCAAAACG
5927 TTTTGAATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 32 0.84
31 6 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (30 bp):
AATAAAGGCAAAACGATTTCGGGTTTTACA
Found at i:5927 original size:30 final size:30
Alignment explanation
Indices: 5861--5930 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
5851 AATAAAGAGT
* * * *
5861 AAAACGATTTCGTGTTTTACAAATAAGGGC
1 AAAACGTTTTCGGGTTTTACAAAAAAAGGC
*
5891 AAAACGTTTTCGGGTTTTTCAAAAAAAGGC
1 AAAACGTTTTCGGGTTTTACAAAAAAAGGC
5921 AAAACGTTTT
1 AAAACGTTTT
5931 GAATGTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (30 bp):
AAAACGTTTTCGGGTTTTACAAAAAAAGGC
Found at i:8947 original size:17 final size:18
Alignment explanation
Indices: 8925--8958 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8915 ACATTTATTA
8925 ATTTAT-TAATGTTCATG
1 ATTTATGTAATGTTCATG
*
8942 ATTTATGTAATTTTCAT
1 ATTTATGTAATGTTCAT
8959 TTTTCCAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (18 bp):
ATTTATGTAATGTTCATG
Found at i:13282 original size:16 final size:15
Alignment explanation
Indices: 13244--13285 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
13234 GCAGAGGTTG
*
13244 ACAGAAAGCAATTAA
1 ACAGAAAACAATTAA
13259 ACAGAAAACAATTAA
1 ACAGAAAACAATTAA
13274 ACTAGAAAACAA
1 AC-AGAAAACAA
13286 AATAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12
Consensus pattern (15 bp):
ACAGAAAACAATTAA
Found at i:15869 original size:68 final size:68
Alignment explanation
Indices: 15786--15920 Score: 198
Period size: 68 Copynumber: 2.0 Consensus size: 68
15776 TCTGGGTTGG
* * *
15786 GTCGATTTCGGTTTCGGGTCATACGATTTGGATAATTTCGGGTTTGAATCTCGGGTTTTCGGGTT
1 GTCGATTTCGGTTTCGGGTCATACGATTTGGATAATTCCGGGTTTGAACCTCGGGTTTTCGGATT
15851 CGA
66 CGA
* * * * *
15854 GTCGTTTTCGGTTTCGGGTCCTGCGGTTTGGATAATTCCGGGTTTGAACCTTGGGTTTTCGGATT
1 GTCGATTTCGGTTTCGGGTCATACGATTTGGATAATTCCGGGTTTGAACCTCGGGTTTTCGGATT
15919 CG
66 CG
15921 GATCATTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 59 1.00
ACGTcount: A:0.12, C:0.16, G:0.32, T:0.40
Consensus pattern (68 bp):
GTCGATTTCGGTTTCGGGTCATACGATTTGGATAATTCCGGGTTTGAACCTCGGGTTTTCGGATT
CGA
Found at i:16870 original size:17 final size:18
Alignment explanation
Indices: 16848--16881 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16838 ACATTTATCA
16848 ATTTAT-TAATGTTCATG
1 ATTTATGTAATGTTCATG
*
16865 ATTTATGTAATTTTCAT
1 ATTTATGTAATGTTCAT
16882 TTTTCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (18 bp):
ATTTATGTAATGTTCATG
Found at i:17479 original size:56 final size:56
Alignment explanation
Indices: 17418--17529 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
17408 ATTATATGTC
17418 AGTAATTTTATCAAACACATGGTGGTGTGTAACAATTTTGCATAAACATTTAAAAT
1 AGTAATTTTATCAAACACATGGTGGTGTGTAACAATTTTGCATAAACATTTAAAAT
*
17474 AGTAATTTTATCAAACACATGGTGGTGTGTAACAATTTTGTATAAACATTTAAAAT
1 AGTAATTTTATCAAACACATGGTGGTGTGTAACAATTTTGCATAAACATTTAAAAT
17530 TCTGAAAAGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (56 bp):
AGTAATTTTATCAAACACATGGTGGTGTGTAACAATTTTGCATAAACATTTAAAAT
Found at i:19448 original size:22 final size:23
Alignment explanation
Indices: 19409--19451 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
19399 AATCCTAATC
19409 CTGGTAGGAATAGTAAAACCTTT
1 CTGGTAGGAATAGTAAAACCTTT
19432 CTGGTAGGAA-AGTAAAACCT
1 CTGGTAGGAATAGTAAAACCT
19452 AATCCTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (23 bp):
CTGGTAGGAATAGTAAAACCTTT
Found at i:22350 original size:30 final size:31
Alignment explanation
Indices: 22316--22387 Score: 105
Period size: 30 Copynumber: 2.4 Consensus size: 31
22306 TAATGACAAA
22316 ATCAGAATTC-TCTCATTCACAAACAAAGAG
1 ATCAGAATTCTTCTCATTCACAAACAAAGAG
*
22346 ATCAGAA-TCTTCTCCTTCACAAACAAAGAG
1 ATCAGAATTCTTCTCATTCACAAACAAAGAG
*
22376 ATCGGAA-TCTTC
1 ATCAGAATTCTTC
22388 CTCCTCGTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
29 2 0.05
30 37 0.95
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (31 bp):
ATCAGAATTCTTCTCATTCACAAACAAAGAG
Found at i:23136 original size:22 final size:23
Alignment explanation
Indices: 23097--23139 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
23087 AATCCTAATC
23097 CTGGTAGGAATAGTAAAACCTTT
1 CTGGTAGGAATAGTAAAACCTTT
23120 CTGGTAGGAA-AGTAAAACCT
1 CTGGTAGGAATAGTAAAACCT
23140 AATCCTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (23 bp):
CTGGTAGGAATAGTAAAACCTTT
Found at i:27687 original size:6 final size:6
Alignment explanation
Indices: 27634--27669 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
27624 CCCCGTCCCA
27634 CTCACC CTCACC CTCACC CTCACC CTCACC CTCACC
1 CTCACC CTCACC CTCACC CTCACC CTCACC CTCACC
27670 GTCCCACTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
CTCACC
Found at i:27699 original size:27 final size:27
Alignment explanation
Indices: 27663--27718 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
27653 TCACCCTCAC
*
27663 CCTCACCGTC-CCACTCCCCCTCCCCAT
1 CCTCACCGTCTCC-CTCCCCATCCCCAT
* *
27690 CCTCCCCGTCTCCGTCCCCATCCCCAT
1 CCTCACCGTCTCCCTCCCCATCCCCAT
27717 CC
1 CC
27719 CCATCCCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.09, C:0.66, G:0.05, T:0.20
Consensus pattern (27 bp):
CCTCACCGTCTCCCTCCCCATCCCCAT
Found at i:27713 original size:6 final size:6
Alignment explanation
Indices: 27704--27732 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
27694 CCCGTCTCCG
27704 TCCCCA TCCCCA TCCCCA TCCCCA TCCCC
1 TCCCCA TCCCCA TCCCCA TCCCCA TCCCC
27733 GTCGCCGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.69, G:0.00, T:0.17
Consensus pattern (6 bp):
TCCCCA
Found at i:27743 original size:18 final size:18
Alignment explanation
Indices: 27692--27743 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
27682 CTCCCCATCC
*
27692 TCCCCGTCTCCGTCCCCA
1 TCCCCGTCCCCGTCCCCA
* *
27710 TCCCCATCCCCATCCCCA
1 TCCCCGTCCCCGTCCCCA
*
27728 TCCCCGTCGCCGTCCC
1 TCCCCGTCCCCGTCCC
27744 ACTCAGCCTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.08, C:0.63, G:0.10, T:0.19
Consensus pattern (18 bp):
TCCCCGTCCCCGTCCCCA
Found at i:29306 original size:2 final size:2
Alignment explanation
Indices: 29299--29328 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
29289 TTTTCTTCTG
29299 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29329 TGGCTGACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29601 original size:47 final size:47
Alignment explanation
Indices: 29547--29641 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
29537 TCTTCCTTTG
* *
29547 ATTTTATAGTCATAGTTGAACCAATTATATCAGTCTTTCGATTTGGT
1 ATTTTATAGTCATAGTTGAACCAACTATATCAGTCTTACGATTTGGT
29594 ATTTTATAGTCATAGTTGAACCAACTATATCAGTCTTACGATTTGGT
1 ATTTTATAGTCATAGTTGAACCAACTATATCAGTCTTACGATTTGGT
29641 A
1 A
29642 GTGATTTGTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (47 bp):
ATTTTATAGTCATAGTTGAACCAACTATATCAGTCTTACGATTTGGT
Found at i:33149 original size:104 final size:103
Alignment explanation
Indices: 32970--33177 Score: 353
Period size: 104 Copynumber: 2.0 Consensus size: 103
32960 GAGATTCTCA
* *
32970 GCCATTACACTTTTTAAATCACTCCTACACACCACTATTATTTTCTCGCTATTCCTTTCCCATCC
1 GCCATTACACTATCTAAATCACTCCTACACACCACTATTATTTTCTCGCTATTCCTTTCCCATCC
33035 TTTCTTCTATAACAAATAGCATGACGAAGTTAAAGGCT
66 TTTCTTCTATAACAAATAGCATGACGAAGTTAAAGGCT
* *
33073 GCCATTGCACTATCTAAATCACTCCTACCACACCACTATTATTTTCTCTCTATTCCTTTCCCATC
1 GCCATTACACTATCTAAATCACTCCTA-CACACCACTATTATTTTCTCGCTATTCCTTTCCCATC
* *
33138 CTTTCTTCTATAACAAATAGCCTTACGAAGTTAAAGGCT
65 CTTTCTTCTATAACAAATAGCATGACGAAGTTAAAGGCT
33177 G
1 G
33178 TCCGCTAAAT
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
103 24 0.24
104 74 0.76
ACGTcount: A:0.27, C:0.29, G:0.08, T:0.36
Consensus pattern (103 bp):
GCCATTACACTATCTAAATCACTCCTACACACCACTATTATTTTCTCGCTATTCCTTTCCCATCC
TTTCTTCTATAACAAATAGCATGACGAAGTTAAAGGCT
Found at i:42401 original size:2 final size:2
Alignment explanation
Indices: 42394--42419 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
42384 GGGGTAACAT
42394 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
42420 ACAACTCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:44383 original size:2 final size:2
Alignment explanation
Indices: 44372--44409 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
44362 TCAATTTCAT
44372 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44410 CTAAAACTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51824 original size:24 final size:23
Alignment explanation
Indices: 51784--51828 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
51774 TTTGACCATT
51784 ATTTATTAAAAAAAATATGTAAA
1 ATTTATTAAAAAAAATATGTAAA
*
51807 ATTTAATTTAAAAAAATATGTA
1 ATTT-ATTAAAAAAAATATGTA
51829 TTGAAAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATTTATTAAAAAAAATATGTAAA
Found at i:52461 original size:2 final size:2
Alignment explanation
Indices: 52456--52483 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
52446 TTTATTTATT
52456 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52484 ATAATTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59129 original size:3 final size:3
Alignment explanation
Indices: 59121--59183 Score: 65
Period size: 3 Copynumber: 21.0 Consensus size: 3
59111 AAGTAGGCAG
* * * *
59121 TGA TGA TGA GGA TGA TGA TGA AGA TGA CGA CT-C TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA -TGA TGA TGA TGA TGA
*
59166 TGA TGA TGA GGA TGA TGA
1 TGA TGA TGA TGA TGA TGA
59184 AGAGGGAATG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.33, C:0.05, G:0.35, T:0.27
Consensus pattern (3 bp):
TGA
Found at i:60761 original size:1 final size:1
Alignment explanation
Indices: 60755--60786 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
60745 CAGGTAAAGG
60755 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
60787 CATTGTAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:61837 original size:6 final size:6
Alignment explanation
Indices: 61828--61891 Score: 110
Period size: 6 Copynumber: 10.7 Consensus size: 6
61818 GAGGCTGAGT
* *
61828 GGGACG GGGACG GGGACG GGGACG GGGACG GGGACG GGGATG GGGATG
1 GGGACG GGGACG GGGACG GGGACG GGGACG GGGACG GGGACG GGGACG
61876 GGGACG GGGACG GGGA
1 GGGACG GGGACG GGGA
61892 GGATGGGGAG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.17, C:0.12, G:0.67, T:0.03
Consensus pattern (6 bp):
GGGACG
Found at i:63063 original size:22 final size:21
Alignment explanation
Indices: 62788--63066 Score: 111
Period size: 22 Copynumber: 12.7 Consensus size: 21
62778 TTGTGGAGTA
*
62788 ATCAAAATTTCATAAGAGGCT
1 ATCAAAATTTCATAAGAGGTT
* *
62809 ATCATAATTTCAT-AGTGTAGTT
1 ATCAAAATTTCATAAGAG--GTT
*
62831 ATCGAAATTTCATATATAGATGGTT
1 ATCAAAATTTC--ATA-AGA-GGTT
* * *
62856 ATCAAAATATCAT-AGCCTGATT
1 ATCAAAATTTCATAAG--AGGTT
* *
62878 ATCAAAACTTCACT--GTATGTAT
1 ATCAAAATTTCA-TAAG-AGGT-T
**
62900 ATCAAAATTTTGT-AGATGGTT
1 ATCAAAATTTCATAAGA-GGTT
* * *
62921 AACAAAATATCACAAGGAGGTT
1 ATCAAAATTTCATAA-GAGGTT
* ** *
62943 ATTAAAAAATCATGAAGAGTTT
1 ATCAAAATTTCAT-AAGAGGTT
* * *
62965 ATCATAATTTTATGAGGAGGTT
1 ATCAAAATTTCAT-AAGAGGTT
* *
62987 ATCAAAATTTCATAGGGATGTT
1 ATCAAAATTTCATA-AGAGGTT
* *
63009 ATC-AAATATAATAGAGAGGTTT
1 ATCAAAATTTCATA-AGAGG-TT
*
63031 ATCAAAATTTCGTAATGAGGTT
1 ATCAAAATTTCATAA-GAGGTT
63053 ATCAAAATTTCATA
1 ATCAAAATTTCATA
63067 GTGTCGTTTC
Statistics
Matches: 190, Mismatches: 48, Indels: 39
0.69 0.17 0.14
Matches are distributed among these distances:
20 3 0.02
21 39 0.21
22 113 0.59
23 18 0.09
24 2 0.01
25 12 0.06
26 2 0.01
27 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (21 bp):
ATCAAAATTTCATAAGAGGTT
Done.