genome.fa.s17902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017902.1 Corchorus olitorius cultivar O-4 contig17935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62648

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42--86	18	2.5	18	100	0	90	22	6	0	71	1.09
19--77	31	2.0	29	86	6	82	18	5	1	74	1.09
650--1654	434	2.3	434	82	6	1181	42	12	13	31	1.82
3632--3688	22	2.6	22	88	0	87	45	14	12	28	1.80
5513--5545	12	2.6	13	90	4	50	78	0	12	9	0.95
7308--7345	19	2.0	19	94	0	67	76	10	0	13	1.02
8668--8755	46	2.0	45	86	6	126	13	15	10	60	1.59
9641--9684	6	7.3	6	84	0	61	36	18	31	13	1.90
10027--10097	30	2.5	27	76	12	79	28	12	36	22	1.91
12573--12619	19	2.5	20	86	6	62	59	2	8	29	1.39
12656--12858	100	2.0	100	91	2	325	34	13	17	34	1.89
15999--16076	39	2.0	39	94	0	138	34	7	11	46	1.69
16227--16428	106	2.0	99	90	6	314	38	8	13	39	1.77
19920--19948	2	14.5	2	100	0	58	51	48	0	0	1.00
34881--34921	7	5.9	7	86	11	57	80	0	14	4	0.87
34881--34921	21	2.0	20	90	4	64	80	0	14	4	0.87
43382--43497	59	2.0	59	98	0	223	28	12	20	37	1.90
46669--46730	12	5.2	12	78	0	61	51	8	12	27	1.68
46672--46730	24	2.5	24	85	0	82	52	8	13	25	1.68
50662--50718	3	19.3	3	96	3	107	35	0	0	64	0.93
51659--51692	17	2.0	17	88	0	50	44	8	8	38	1.67
52403--53018	202	3.0	202	98	0	1196	28	18	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55373--55577	104	2.0	103	87	4	297	37	8	3	49	1.52
56238--56789	22	25.3	21	68	14	230	35	17	9	37	1.83
57077--57287	44	4.7	43	76	12	151	34	16	10	38	1.82
57176--57287	41	2.6	42	81	6	120	37	16	10	34	1.84
56801--57288	22	21.9	22	66	19	117	34	15	10	40	1.81
57981--58402	53	8.1	53	84	4	552	49	15	8	25	1.73
58034--58426	206	1.9	206	97	0	741	49	16	9	25	1.74
61211--61338	66	1.9	67	87	4	188	45	3	14	35	1.64

Tables:   1

The End!