Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017907.1 Corchorus olitorius cultivar O-4 contig17940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40292
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:5494 original size:27 final size:28
Alignment explanation
Indices: 5455--5509 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
5445 TTTTTCAATC
* **
5455 TTGGGTACTTGCGACATTTTTGCAATTT
1 TTGGCTACTTGCGACAACTTTGCAATTT
*
5483 TTGGCTAC-TGCGTCAACTTTGCAATTT
1 TTGGCTACTTGCGACAACTTTGCAATTT
5510 CGGGTTGCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (28 bp):
TTGGCTACTTGCGACAACTTTGCAATTT
Found at i:9380 original size:12 final size:11
Alignment explanation
Indices: 9353--9385 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
9343 AACCGTTTAA
9353 TAATTATATAT
1 TAATTATATAT
9364 T-ATTATATAT
1 TAATTATATAT
9374 GTAATTATATAT
1 -TAATTATATAT
9386 ATCTAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.45
11 2 0.10
12 9 0.45
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATTATATAT
Found at i:9414 original size:21 final size:22
Alignment explanation
Indices: 9381--9421 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
9371 TATGTAATTA
**
9381 TATATATCTAATAT-TATTTTT
1 TATATATAAAATATATATTTTT
9402 TATATATAAAATATATATTT
1 TATATATAAAATATATATTT
9422 AATTATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
TATATATAAAATATATATTTTT
Found at i:9427 original size:23 final size:23
Alignment explanation
Indices: 9353--9433 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 23
9343 AACCGTTTAA
* *
9353 TAATTATATAT-TATTATATATG
1 TAATTATATATATAATATATATT
9375 TAATTATATATATCTAATAT-TATT
1 TAATTATATATA--TAATATATATT
* *
9399 T-TTTATATATAAAATATATATT
1 TAATTATATATATAATATATATT
*
9421 TAATTATAAATAT
1 TAATTATATATAT
9434 TACTAAACGG
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 5 0.11
22 16 0.34
23 17 0.36
24 4 0.09
25 5 0.11
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (23 bp):
TAATTATATATATAATATATATT
Found at i:9930 original size:27 final size:27
Alignment explanation
Indices: 9835--10427 Score: 390
Period size: 27 Copynumber: 21.9 Consensus size: 27
9825 AAAGAGAGAT
* *
9835 GCTCCCACAGTTGAGACTCATGCTGGAA
1 GCTCCCGCAGTTGGGACTCATGCT-GAA
* *
9863 -CTCCCGCAATTGGGACTCAAT-CTATGCA
1 GCTCCCGCAGTTGGGACTC-ATGC--TGAA
* * * *
9891 GCTTCCGCGGTTGGGACACACGCTGAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
** *
9918 GCTCCCGCAGTTGGGACTCGCGCTACAAA
1 GCTCCCGCAGTTGGGACTCATGCT--GAA
* ** *
9947 ACT-CC-CA--TAAGACTCATGATGAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
*
9970 GCTCCCGCAGTTGGGACTCATGTTGAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
* **
9997 GCTCCCGAAGTTGGGACTCATGCCAAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
10024 GC-CTCCGCAGTTGGGACTCATGCTGAA
1 GCTC-CCGCAGTTGGGACTCATGCTGAA
* * **
10051 GCTCCCGCAATTAGGACTCATGCCAAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
10078 GC-CTCCGCAGTTGGGACTCATGCTGAA
1 GCTC-CCGCAGTTGGGACTCATGCTGAA
* * **
10105 GTTCCCGCAGTCGGGACTCATGCCAAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
* *
10132 CCT-CCGTAGTTTGGGACTCATGCTGAA
1 GCTCCCGCAG-TTGGGACTCATGCTGAA
*
10159 GCTCCCGTAGTTGGGACTCATGCTTGAA
1 GCTCCCGCAGTTGGGACTCATGC-TGAA
* * **
10187 -CTCCCGTAATTGGGACTCACGTTATGCAA
1 GCTCCCGCAGTTGGGACTCA--TGCTG-AA
* * * *
10216 -CTTCCGCCGTTGGGACTCACGCTATGCA
1 GCTCCCGCAGTTGGGACTCATGC--TGAA
** * * *
10244 GCTTTCGCGGTTGGGACTCACGCTAAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
* ** *
10271 GTTCCCGCAGTTGGGACTCACACTATAAA
1 GCTCCCGCAGTTGGGACTCATGC--TGAA
* * ***
10300 ACT-CC-C-G-TAGGACTCATAAGGAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
10323 GCTCCCGCAGTTGGGACTCATGCTGAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
* * *
10350 ACTCCCGCAGTTGGGATTCATGCTAAA
1 GCTCCCGCAGTTGGGACTCATGCTGAA
*
10377 GC-CTCCGCAGTTGGTACTCATGCTGAA
1 GCTC-CCGCAGTTGGGACTCATGCTGAA
* *
10404 GCCCCCGCAGTCGGGACTCATGCT
1 GCTCCCGCAGTTGGGACTCATGCT
10428 AATGATCTCG
Statistics
Matches: 440, Mismatches: 93, Indels: 65
0.74 0.16 0.11
Matches are distributed among these distances:
23 8 0.02
24 4 0.01
25 20 0.05
26 10 0.02
27 308 0.70
28 25 0.06
29 65 0.15
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (27 bp):
GCTCCCGCAGTTGGGACTCATGCTGAA
Found at i:10229 original size:29 final size:29
Alignment explanation
Indices: 10196--10268 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
10186 ACTCCCGTAA
*
10196 TTGGGACTCACGTTATGCAACTTCCGCCG
1 TTGGGACTCACGCTATGCAACTTCCGCCG
* * *
10225 TTGGGACTCACGCTATGCAGCTTTCGCGG
1 TTGGGACTCACGCTATGCAACTTCCGCCG
10254 TTGGGACTCACGCTA
1 TTGGGACTCACGCTA
10269 AAGTTCCCGC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.16, C:0.29, G:0.27, T:0.27
Consensus pattern (29 bp):
TTGGGACTCACGCTATGCAACTTCCGCCG
Found at i:12486 original size:29 final size:28
Alignment explanation
Indices: 12454--12518 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
12444 TGGGTTTCGT
*
12454 TTGGGCTC-ATGTTGTGTATATGAAATTTA
1 TTGGGCTCTATGTTGTGTATATG--ATGTA
* *
12483 TTGGG-TCTATTTTGTGTATGTGATGTA
1 TTGGGCTCTATGTTGTGTATATGATGTA
12510 TTGGGCTCT
1 TTGGGCTCT
12519 TTTTATTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 9 0.29
28 5 0.16
29 17 0.55
ACGTcount: A:0.17, C:0.08, G:0.28, T:0.48
Consensus pattern (28 bp):
TTGGGCTCTATGTTGTGTATATGATGTA
Found at i:17421 original size:92 final size:92
Alignment explanation
Indices: 17308--17484 Score: 264
Period size: 92 Copynumber: 1.9 Consensus size: 92
17298 GAATGTATCG
* * * **
17308 AAAACCCAAAACCCGAATGACCCAGAACCTGTGTGACCTAAGGCAAAAACCTAAACTCGTATGAC
1 AAAACCCAAAACCCGAATGACCCAGAACCCGTGTGACCTAAGGCAAAAACCCAAACCCACATGAC
17373 CTTAGACCCAGCAGACCCGAGACCCGA
66 CTTAGACCCAGCAGACCCGAGACCCGA
* * * *
17400 AAAATCCAAAACCCGAATGACCCAGAACCCGTGTGACTTGAGGCGAAAACCCAAACCCACATGAC
1 AAAACCCAAAACCCGAATGACCCAGAACCCGTGTGACCTAAGGCAAAAACCCAAACCCACATGAC
*
17465 CTTAGACCCTGCAGACCCGA
66 CTTAGACCCAGCAGACCCGA
17485 ATGACCTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.37, C:0.33, G:0.18, T:0.12
Consensus pattern (92 bp):
AAAACCCAAAACCCGAATGACCCAGAACCCGTGTGACCTAAGGCAAAAACCCAAACCCACATGAC
CTTAGACCCAGCAGACCCGAGACCCGA
Found at i:17694 original size:15 final size:16
Alignment explanation
Indices: 17674--17703 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17664 ATTCTTGTTA
17674 TAAACT-CCAATACAT
1 TAAACTACCAATACAT
17689 TAAACTACCAATACA
1 TAAACTACCAATACA
17704 CACTCCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAACTACCAATACAT
Found at i:18172 original size:131 final size:131
Alignment explanation
Indices: 18029--18288 Score: 412
Period size: 131 Copynumber: 2.0 Consensus size: 131
18019 ATTTGGGAAA
* * *
18029 TATATTTTAAAAATTCTAATATATCTAAGTTTTTTAATTAAATTAGAAAAATGGCAAAAATAAAA
1 TATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGAAAAATGGCAAAAATAAAA
* *
18094 TAGGTATAAGGATATTAAATTGAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAA
66 TAAGTATAAGGATATTAAATTGAATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAA
18159 G
131 G
* * * *
18160 TATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAATTAAAT
1 TATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGAAAAATGGCAAAAATAAAA
* * *
18225 TAATTATAAGGATATTAGATTTAATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAA
66 TAAGTATAAGGATATTAAATTGAATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAA
18289 GGTTAAACAA
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 117 1.00
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.37
Consensus pattern (131 bp):
TATATTTAAAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGAAAAATGGCAAAAATAAAA
TAAGTATAAGGATATTAAATTGAATCAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAA
G
Found at i:19722 original size:29 final size:28
Alignment explanation
Indices: 19653--19722 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 28
19643 CAGGATATCG
* * *
19653 AAAATTCAAAA-AAGATTGAAAGATAAA
1 AAAAATCAAAAGAAAATTGAAAGAGAAA
*
19680 AATAA--AAAAG-AAATTGAAAGAGGAAA
1 AAAAATCAAAAGAAAATTGAAAGA-GAAA
19706 AAAAATCAAAAGAAAAT
1 AAAAATCAAAAGAAAAT
19723 GTTCTTTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
25 14 0.42
26 7 0.21
27 3 0.09
28 5 0.15
29 4 0.12
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.14
Consensus pattern (28 bp):
AAAAATCAAAAGAAAATTGAAAGAGAAA
Found at i:19982 original size:15 final size:15
Alignment explanation
Indices: 19962--19991 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
19952 TATTATACAC
19962 TTCTCATCAAAATTA
1 TTCTCATCAAAATTA
19977 TTCTCATCAAAATTA
1 TTCTCATCAAAATTA
19992 GGGTTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (15 bp):
TTCTCATCAAAATTA
Found at i:23467 original size:70 final size:68
Alignment explanation
Indices: 23339--23475 Score: 175
Period size: 70 Copynumber: 2.0 Consensus size: 68
23329 GCTTGAAATA
* * ** * * *
23339 CATTGTCTTTATATGTGATTTTATCATTTGGATGTAATTAATGATGTTCATACTATTTTTTTCCT
1 CATTGTCTTTATATGTAATTTTAGCATTAAGATGTAATTAATGATGCTCACACCA--TTTTTCCT
23404 TAGTG
64 TAGTG
* *
23409 CATTGTCTTTATATGTAATTTTAGCATTAAGATGTAATTAATGGTGCTCCCACCATTTTTCCTTA
1 CATTGTCTTTATATGTAATTTTAGCATTAAGATGTAATTAATGATGCTCACACCATTTTTCCTTA
23474 GT
66 GT
23476 TGTTAGTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 12 0.21
70 46 0.79
ACGTcount: A:0.24, C:0.13, G:0.14, T:0.49
Consensus pattern (68 bp):
CATTGTCTTTATATGTAATTTTAGCATTAAGATGTAATTAATGATGCTCACACCATTTTTCCTTA
GTG
Found at i:23915 original size:4 final size:4
Alignment explanation
Indices: 23906--23969 Score: 56
Period size: 4 Copynumber: 16.0 Consensus size: 4
23896 TATGCTTCTG
* * * * * * *
23906 ATAT ATAT ATAT ATAT ATAT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
*
23954 ATAT ATGT ATAT ATAT
1 ATAT ATAT ATAT ATAT
23970 GTATGTATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (4 bp):
ATAT
Found at i:23919 original size:8 final size:8
Alignment explanation
Indices: 23906--23967 Score: 79
Period size: 8 Copynumber: 7.8 Consensus size: 8
23896 TATGCTTCTG
*
23906 ATATATAT
1 ATATATGT
*
23914 ATATATAT
1 ATATATGT
23922 ATATATGT
1 ATATATGT
*
23930 ATGTATGT
1 ATATATGT
*
23938 ATGTATGT
1 ATATATGT
*
23946 ATGTATGT
1 ATATATGT
23954 ATATATGT
1 ATATATGT
23962 ATATAT
1 ATATAT
23968 ATGTATGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 51 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (8 bp):
ATATATGT
Found at i:23923 original size:12 final size:12
Alignment explanation
Indices: 23906--23982 Score: 86
Period size: 12 Copynumber: 6.6 Consensus size: 12
23896 TATGCTTCTG
* *
23906 ATATATATATAT
1 ATATATGTATGT
*
23918 ATATATATATGT
1 ATATATGTATGT
*
23930 ATGTATGTATGT
1 ATATATGTATGT
*
23942 ATGTATGTATGT
1 ATATATGTATGT
23954 ATATATGTA--T
1 ATATATGTATGT
23964 ATATATGTATGT
1 ATATATGTATGT
*
23976 ATTTATG
1 ATATATG
23983 CATGAATCCT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
10 10 0.17
12 48 0.83
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (12 bp):
ATATATGTATGT
Found at i:23974 original size:4 final size:4
Alignment explanation
Indices: 23925--23982 Score: 75
Period size: 4 Copynumber: 15.0 Consensus size: 4
23915 TATATATATA
* *
23925 TATG TATG TATG TATG TATG TATG TATG TATA TATG TA-- TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
23971 TATG TATT TATG
1 TATG TATG TATG
23983 CATGAATCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
2 2 0.04
4 45 0.96
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:25890 original size:16 final size:16
Alignment explanation
Indices: 25865--25899 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
25855 CAATTCGGTG
*
25865 GAATTAAGGGGTAATT
1 GAATTAAGGGGGAATT
*
25881 GAATTGAGGGGGAATT
1 GAATTAAGGGGGAATT
25897 GAA
1 GAA
25900 AATGGCAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.26
Consensus pattern (16 bp):
GAATTAAGGGGGAATT
Found at i:34907 original size:128 final size:128
Alignment explanation
Indices: 34678--34940 Score: 499
Period size: 128 Copynumber: 2.1 Consensus size: 128
34668 GGTGATTTAG
34678 AACAGATACAAGAACCATTTTTCTCAATATTGATTAATTATTCTCTTGTGGTGCGCACAAACAAA
1 AACAGATACAAGAACCATTTTTCTCAATATTGATTAATTATTCTCTTGTGGTGCGCACAAACAAA
* *
34743 ATCAATTAAACTTTTAAAATTTATCTTTCTACAGAACAATCTCCTAGAGGGCTCCAACAATCC
66 ATCAATGAAACTTTTAAAATTTATCTTTCTAAAGAACAATCTCCTAGAGGGCTCCAACAATCC
34806 AACAGATACAAGAACCATTTTTCTCAATATTGATTAATTATTCTCTTGTGGTGCGCACAAACAAA
1 AACAGATACAAGAACCATTTTTCTCAATATTGATTAATTATTCTCTTGTGGTGCGCACAAACAAA
34871 ATCAATGAAACTTTTAAAATTTATCTTTCTAAAGAACAATCTCCTAGAGGGCTCCAACAATCC
66 ATCAATGAAACTTTTAAAATTTATCTTTCTAAAGAACAATCTCCTAGAGGGCTCCAACAATCC
*
34934 AAAAGAT
1 AACAGAT
34941 TTTTTTTTCT
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 132 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (128 bp):
AACAGATACAAGAACCATTTTTCTCAATATTGATTAATTATTCTCTTGTGGTGCGCACAAACAAA
ATCAATGAAACTTTTAAAATTTATCTTTCTAAAGAACAATCTCCTAGAGGGCTCCAACAATCC
Found at i:36264 original size:18 final size:19
Alignment explanation
Indices: 36241--36281 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36231 ATGAAGCAAC
*
36241 TAAAAAAAA-CTAGGAATT
1 TAAAAAAAATCTAGGAATA
*
36259 TAAAAAAAATCTATGAATA
1 TAAAAAAAATCTAGGAATA
36278 TAAA
1 TAAA
36282 CAGAGAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.24
Consensus pattern (19 bp):
TAAAAAAAATCTAGGAATA
Found at i:36614 original size:25 final size:26
Alignment explanation
Indices: 36580--36649 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 26
36570 TATCGAATTT
36580 GAGACAAAGAAGCA-ATGATTTATTC
1 GAGACAAAGAAGCACATGATTTATTC
36605 GAGACAAAGAAGCAGGAGCATGATTTATTC
1 GAGACAAAGAAGC---A-CATGATTTATTC
36635 GAGACAAAGAAGCAC
1 GAGACAAAGAAGCAC
36650 TTGTAAGGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
25 13 0.32
26 1 0.03
27 1 0.03
28 1 0.03
30 24 0.60
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.17
Consensus pattern (26 bp):
GAGACAAAGAAGCACATGATTTATTC
Found at i:39175 original size:31 final size:31
Alignment explanation
Indices: 39113--39200 Score: 149
Period size: 31 Copynumber: 2.8 Consensus size: 31
39103 TAAACAATAC
*
39113 TTCTCAACTGTATTCTAAAAATTCATTATAAA
1 TTCTCAATTGTATTCTAAAAATT-ATTATAAA
39145 TTCTCAATTGTATTCTAAAAATTATTATAAA
1 TTCTCAATTGTATTCTAAAAATTATTATAAA
*
39176 TTCTCAATTGTATTCAAAAAATTAT
1 TTCTCAATTGTATTCTAAAAATTAT
39201 AAAATCCTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
31 32 0.59
32 22 0.41
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.43
Consensus pattern (31 bp):
TTCTCAATTGTATTCTAAAAATTATTATAAA
Done.