Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017908.1 Corchorus olitorius cultivar O-4 contig17941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23850

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3034--3155
50
2.4
50
82
2
147
23
23
12
40
1.89
3034--3170
50
2.7
49
79
8
143
24
24
13
38
1.90
3425--3956
54
10.0
53
82
8
527
34
20
15
30
1.93
3425--3929
210
2.4
206
84
6
638
34
20
15
30
1.93
3955--4097
8
18.6
8
69
12
86
41
5
23
30
1.77
3995--4114
22
5.4
21
85
9
141
40
5
23
30
1.76
3995--4114
44
2.7
43
87
7
159
40
5
23
30
1.76
4144--4201
26
2.3
25
82
5
71
36
18
24
20
1.95
5413--5449
19
1.9
19
88
0
56
40
5
0
54
1.24
6163--6206
19
2.2
21
88
8
65
34
4
6
54
1.47
6978--7019
22
2.0
21
90
4
66
4
21
0
73
1.01
9692--10248
67
8.4
67
81
7
454
40
17
19
22
1.91
9692--10256
133
4.3
132
78
10
511
41
16
19
22
1.90
12512--12597
33
2.6
33
81
0
91
9
33
39
17
1.82
12843--12958
33
3.5
33
79
2
108
16
42
34
6
1.75
18934--18967
18
1.9
18
94
5
61
44
5
8
41
1.60
19610--19645
18
1.9
18
88
5
54
50
2
22
25
1.63
21861--22170
14
22.8
14
78
10
286
61
19
10
9
1.53
21861--22178
27
11.7
27
75
14
273
61
19
9
9
1.53

Tables:   1

The End!