Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017909.1 Corchorus olitorius cultivar O-4 contig17942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122033

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2203--2272
11
6.7
11
67
16
51
47
2
1
48
1.25
21685--21714
16
1.9
16
93
6
53
60
3
0
36
1.14
25362--25501
69
2.0
70
90
1
219
49
13
13
23
1.78
29005--29194
60
3.4
60
62
20
147
33
12
16
36
1.87
29009--29225
108
2.0
108
100
0
434
34
14
16
34
1.90
30784--30816
15
2.2
15
94
0
57
33
12
18
36
1.88
34323--34359
19
1.9
19
88
0
56
37
10
18
32
1.86
34344--34422
21
3.8
21
94
0
140
37
5
18
37
1.73
35628--35674
22
2.1
22
84
11
60
0
42
0
57
0.98
36072--36123
7
7.1
7
89
4
68
42
0
1
55
1.10
36073--36117
15
3.0
15
81
12
65
37
0
2
60
1.09
40406--40560
76
2.0
76
100
0
310
34
11
14
38
1.83
42484--42610
45
2.8
45
91
0
200
38
21
5
34
1.77
47955--47996
18
2.4
18
84
11
52
50
0
2
47
1.14
64714--64743
15
2.0
15
100
0
60
20
13
20
46
1.83
75561--75696
49
2.8
48
84
9
145
28
17
5
47
1.71
77871--78263
197
2.0
196
96
0
723
31
9
20
39
1.84
78353--79404
434
2.4
435
82
6
1225
29
13
13
42
1.83
79614--79934
168
1.9
168
90
1
509
37
9
15
37
1.79
80457--80513
16
3.6
15
73
19
53
10
15
33
40
1.82
80457--80513
15
3.6
15
77
17
53
10
15
33
40
1.82
82116--82159
17
2.6
17
89
3
72
4
15
40
38
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82116--82173
16
3.6
16
84
6
73
5
13
41
39
1.67
103539--103588
23
2.2
23
85
7
66
2
36
2
60
1.20
103535--103595
30
2.0
30
81
12
72
3
34
1
60
1.23
105480--105542
31
2.0
31
96
0
117
38
15
9
36
1.81
105558--105612
17
2.9
19
78
15
69
74
1
0
23
0.91
105682--105740
31
2.0
30
83
6
75
40
11
18
28
1.86
108550--108632
41
2.0
40
86
4
112
39
25
22
12
1.89
108664--108718
27
2.0
27
92
0
92
36
12
16
34
1.87
117419--117461
21
1.9
24
86
13
65
27
9
4
58
1.49

Tables:   1

The End!