Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017911.1 Corchorus olitorius cultivar O-4 contig17944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92783

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5703--5743
2
20.5
2
100
0
82
0
51
0
48
1.00
5780--5835
27
2.1
27
100
0
112
23
14
10
51
1.73
7081--7111
15
2.1
15
93
0
53
12
19
19
48
1.81
7126--7163
20
1.9
20
88
0
58
31
31
15
21
1.94
11580--11646
31
2.2
31
92
5
111
47
11
19
20
1.81
11778--11855
31
2.5
31
93
0
129
34
16
11
37
1.85
11801--11911
31
3.7
29
79
7
89
32
16
13
37
1.87
12887--13027
31
4.6
30
77
7
133
38
13
16
31
1.87
12887--13027
60
2.3
62
81
2
151
38
13
16
31
1.87
13157--13223
31
2.2
31
92
5
111
20
19
11
47
1.81
17970--18005
18
2.0
18
94
0
63
50
11
13
25
1.75
24439--24474
19
1.9
18
88
5
54
27
22
8
41
1.82
31241--31276
19
1.9
18
88
5
54
27
22
8
41
1.82
33940--34084
28
5.1
29
87
2
179
15
17
25
41
1.89
35190--35263
22
3.2
22
76
14
85
41
25
18
13
1.87
49454--49702
51
4.9
51
87
3
351
36
12
26
24
1.92
49454--49702
101
2.5
101
89
2
374
36
12
26
24
1.92
56708--56763
26
2.2
26
83
6
69
7
10
3
78
1.06
60536--60569
16
2.1
17
88
5
52
38
14
2
44
1.61
62775--62837
3
20.7
3
96
3
117
66
0
0
33
0.92
62896--62944
26
1.9
25
87
4
71
53
10
20
16
1.72
69456--70078
67
9.4
66
78
9
442
23
19
16
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69452--70078
134
4.7
131
75
10
494
23
19
16
40
1.91
69447--70078
201
3.2
194
79
11
590
22
19
16
40
1.90
74726--74801
9
8.8
9
68
18
54
14
40
9
35
1.78
75493--75517
12
2.1
12
100
0
50
24
16
8
52
1.70
79071--79186
36
3.2
37
90
3
173
31
18
15
35
1.92
79142--79230
27
3.4
27
62
6
74
30
19
14
35
1.91
79144--79383
52
4.6
52
90
0
372
28
17
14
39
1.89
86705--86736
5
6.6
5
92
7
57
0
18
0
81
0.70
88383--88416
3
11.3
3
87
0
50
2
32
2
61
1.26

Tables:   1

The End!