Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001792.1 Corchorus olitorius cultivar O-4 contig01792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1456
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:214 original size:22 final size:21

Alignment explanation


    Indices: 186--239  Score: 60
    Period size: 19  Copynumber: 2.6  Consensus size: 21

        176 GAAATTCGTG

                                  
        186 TTTGAAGACTTATTGAAGATAA
          1 TTTGAAGA-TTATTGAAGATAA

                               * 
        208 TTTGAAGA-T-TTGAAGATCA
          1 TTTGAAGATTATTGAAGATAA

                          
        227 -TTGAAGAATTATT
          1 TTTGAAG-ATTATT

        240 TCCAAGAAGC


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    6  0.21
  19   10  0.36
  20    2  0.07
  21    2  0.07
  22    8  0.29

ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39


Consensus pattern (21 bp):   
TTTGAAGATTATTGAAGATAA

Done.