Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017920.1 Corchorus olitorius cultivar O-4 contig17953, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1228
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.36


Found at i:832 original size:5 final size:6

Alignment explanation


    Indices: 803--837  Score: 54
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        793 GGTCTTCTCC

                                                     
        803 CTTTTT CTTCTTT CTTTTT CTTTTT C-TTTT CTTTT
          1 CTTTTT CTT-TTT CTTTTT CTTTTT CTTTTT CTTTT

        838 GGGTCCGGTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   5    5  0.19
   6   16  0.59
   7    6  0.22

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (6 bp):   
CTTTTT

Found at i:834 original size:11 final size:12

Alignment explanation


    Indices: 803--837  Score: 54
    Period size: 11  Copynumber: 2.9  Consensus size: 12

        793 GGTCTTCTCC

                         
        803 CTTTTTCTTCTTT
          1 CTTTTTCTT-TTT

                        
        816 CTTTTTCTTTTT
          1 CTTTTTCTTTTT

                       
        828 C-TTTTCTTTT
          1 CTTTTTCTTTT

        838 GGGTCCGGTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  11    9  0.41
  12    4  0.18
  13    9  0.41

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (12 bp):   
CTTTTTCTTTTT
Done.