genome.fa.s17921.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017921.1 Corchorus olitorius cultivar O-4 contig17954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159834

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267--1321	24	2.3	23	82	11	67	7	9	23	60	1.52
10079--10116	17	2.2	18	90	4	60	65	10	13	10	1.47
10693--10724	2	16.5	2	93	6	57	0	53	0	46	1.00
15396--15445	21	2.4	21	90	6	75	28	18	26	28	1.98
17893--17973	33	2.5	33	83	4	92	23	8	23	44	1.81
17925--18021	33	2.9	33	86	6	117	25	7	21	45	1.77
19296--19408	21	5.4	21	93	2	183	29	17	26	26	1.98
30971--30999	5	5.8	5	100	0	58	62	20	17	0	1.33
46117--46544	68	6.5	64	78	10	321	40	17	19	22	1.92
46170--46434	135	2.0	135	82	7	333	41	17	18	22	1.90
46310--46558	135	1.8	133	80	9	290	41	18	18	21	1.90
47489--47528	6	6.8	6	85	5	55	0	5	10	85	0.75
50542--50575	17	2.0	17	88	0	50	67	14	8	8	1.41
50913--51235	90	3.6	90	86	4	433	34	26	13	25	1.93
51275--51348	36	2.1	36	94	0	130	36	25	16	21	1.94
51156--51423	135	2.0	136	85	6	366	34	22	15	27	1.94
51338--51476	53	2.6	53	96	0	260	32	21	15	30	1.94
51537--51643	54	2.0	54	90	0	169	34	19	14	31	1.91
51550--51725	96	1.8	96	90	0	280	33	21	13	31	1.92
51646--51876	104	2.2	105	82	5	270	33	22	16	27	1.96
51646--51900	53	4.8	52	74	10	214	31	21	17	28	1.96
51936--52012	16	4.8	16	74	6	75	38	7	19	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51912--52027	24	4.9	24	80	6	121	37	7	23	31	1.83
52056--52114	26	2.3	25	82	5	73	37	22	20	20	1.95
52085--52162	35	2.2	35	81	4	95	37	17	23	21	1.94
52059--52240	96	1.9	97	82	3	233	34	21	23	20	1.97
52128--52271	62	2.3	61	84	5	184	31	22	24	22	1.98
52261--52334	35	2.1	35	82	9	89	40	20	17	21	1.91
53216--53241	13	2.0	13	100	0	52	38	23	0	38	1.55
53636--53679	20	2.2	20	87	0	61	34	6	6	52	1.55
54321--54365	14	3.4	13	85	11	56	37	17	6	37	1.76
54321--54371	26	2.0	25	81	14	59	35	17	5	41	1.74
57158--57389	66	3.5	65	77	10	202	37	16	21	25	1.94
57427--57582	68	2.3	68	86	8	221	44	17	16	21	1.86
58911--58936	12	2.2	12	100	0	52	26	23	7	42	1.81
71956--72139	37	4.8	36	81	12	208	55	4	20	20	1.60
72036--72138	22	4.8	22	83	7	122	55	3	22	18	1.59
72033--72168	64	2.1	64	87	2	202	52	4	22	19	1.63
72116--72179	28	2.3	29	76	13	80	53	3	26	17	1.59
72058--72253	84	2.3	85	80	9	215	53	4	20	21	1.64
72298--72366	36	1.9	35	88	2	102	55	5	15	23	1.62
72299--72377	36	2.2	36	84	6	99	55	6	17	20	1.63
72358--72447	27	3.3	27	80	7	92	56	5	20	17	1.60
73551--73624	31	2.4	31	84	2	96	35	17	17	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75408--75710	52	5.8	51	92	1	464	34	18	15	30	1.93
75409--75710	156	1.9	155	93	2	525	35	18	15	30	1.93
78277--78383	53	2.0	53	80	10	121	26	4	18	50	1.66
86725--86777	22	2.4	22	78	12	56	18	7	7	66	1.41
98842--99014	88	2.0	88	98	0	337	31	16	17	33	1.93
102527--102561	2	17.5	2	93	0	61	48	0	0	51	1.00
104437--104477	2	20.5	2	100	0	82	51	0	0	48	1.00
106943--106972	3	10.0	3	92	0	51	36	0	0	63	0.95
118163--118214	3	17.3	3	100	0	104	32	0	0	67	0.91
118224--118248	13	1.9	13	100	0	50	56	0	0	44	0.99
121612--121669	14	3.9	14	74	12	62	58	0	8	32	1.28
121604--121668	31	2.1	30	94	2	112	56	0	6	36	1.24
121940--122000	22	2.5	24	82	12	63	47	0	1	50	1.10
122211--122248	11	3.5	11	85	10	51	57	2	0	39	1.12
122866--122891	7	3.7	7	100	0	52	11	0	15	73	1.11
128180--128365	78	2.4	77	85	7	250	31	22	29	16	1.96
127854--128455	40	14.9	40	73	11	335	35	22	27	15	1.94
128460--129022	46	12.7	46	86	4	628	38	17	25	19	1.93
128458--129022	89	6.4	89	85	5	727	38	16	25	19	1.93
130489--130528	21	1.9	22	90	10	66	15	0	22	62	1.32
134235--134295	21	2.8	22	78	9	63	40	13	1	44	1.53
135556--135593	18	2.2	18	85	4	51	73	2	0	23	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139976--140011	19	1.9	18	88	5	54	27	22	8	41	1.82
142366--142657	76	3.8	76	90	0	458	16	22	34	25	1.95
153394--153424	15	2.1	15	93	0	53	12	9	6	70	1.31
153762--153815	27	2.0	26	82	10	65	40	9	22	27	1.84

Tables:   1

The End!