Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017922.1 Corchorus olitorius cultivar O-4 contig17955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11564

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
830--906
3
25.7
3
76
5
66
33
3
38
23
1.73
830--915
30
2.9
29
85
3
100
33
5
38
22
1.78
2107--2210
45
2.3
45
83
3
129
27
13
17
41
1.87
2484--2533
24
2.1
24
88
0
73
22
16
14
48
1.81
3494--3540
22
2.1
23
92
4
78
74
0
4
21
0.99
3576--3616
22
2.0
20
90
9
64
68
0
7
24
1.15
7095--7502
48
8.4
48
79
11
375
39
18
27
14
1.90
7095--7413
96
3.3
96
90
2
462
40
18
26
14
1.89
7095--7451
144
2.5
144
83
5
452
39
18
26
14
1.90
7419--7763
50
6.9
50
88
3
473
30
16
30
23
1.96
7467--7763
148
2.0
150
90
2
465
29
15
30
23
1.95
8651--8705
20
2.8
20
88
5
76
36
16
3
43
1.65

Tables:   1

The End!